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(-) Description

Title :  CRYSTAL STRUCTURE OF ISOCYANIDE HYDRATASE FROM PSEUDOMONAS FLUORESCENS
 
Authors :  M. Lakshminarasimhan, P. Madzelan, R. Nan, N. M. Milkovic, M. A. Wilson
Date :  25 Jun 10  (Deposition) - 14 Jul 10  (Release) - 29 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.05
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Dj-1 Superfamily, Isocyanide Hydratase, Isonitrile Hydratase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lakshminarasimhan, P. Madzelan, R. Nan, N. M. Milkovic, M. A. Wilso
Evolution Of New Enzymatic Function By Structural Modulatio Of Cysteine Reactivity In Pseudomonas Fluorescens Isocyanid Hydratase.
J. Biol. Chem. V. 285 29651 2010
PubMed-ID: 20630867  |  Reference-DOI: 10.1074/JBC.M110.147934

(-) Compounds

Molecule 1 - ISOCYANIDE HYDRATASE
    Chains: A, B
    EC Number: 4.2.1.103
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PFL_4109
    Organism Common: BACTERIUM FLUORESCEN
    Organism Scientific: PSEUDOMONAS FLUORESCENS
    Organism Taxid: 294

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric/Biological Unit (2, 7)
No.NameCountTypeFull Name
1CSO2Mod. Amino AcidS-HYDROXYCYSTEINE
2EDO5Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:201 , GLN A:202 , GLN A:205 , HOH A:1484BINDING SITE FOR RESIDUE EDO A 502
2AC2SOFTWAREHIS A:121 , EDO A:504 , HOH A:1360 , HOH A:1361 , HOH A:1368 , GLN B:181BINDING SITE FOR RESIDUE EDO A 503
3AC3SOFTWAREGLN A:14 , GLY A:71 , CSO A:101 , THR A:102 , ARG A:214 , EDO A:503 , HOH A:1364 , HOH A:1375BINDING SITE FOR RESIDUE EDO A 504
4AC4SOFTWAREGLN B:17 , GLY B:74 , CSO B:104 , THR B:105 , HOH B:1378BINDING SITE FOR RESIDUE EDO B 501
5AC5SOFTWAREPHE B:89 , GLN B:92 , HOH B:1037BINDING SITE FOR RESIDUE EDO B 505

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3NON)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3NON)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3NON)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3NON)

(-) Exons   (0, 0)

(no "Exon" information available for 3NON)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:226
 aligned with Q4K977_PSEF5 | Q4K977 from UniProtKB/TrEMBL  Length:228

    Alignment length:226
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
         Q4K977_PSEF5     2 AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPPFNAGSPDTAPASVVQQARQRAADSLHKRREITLRAAARLAA 227
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhhhhh....eeeeeee...eeee.....eeee.ee........eeee....hhhhhh.hhhhhhhhhhhhh...eeeee.hhhhhhhhh......ee..hhhhhhhhhhhh.ee....eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3non A   2 AVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVcTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPPFNAGSPDTAPASVVQQARQRAADSLHKRREITLRAAARLAA 227
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221      
                                                                                                                             101-CSO                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:230
 aligned with Q4K977_PSEF5 | Q4K977 from UniProtKB/TrEMBL  Length:228

    Alignment length:230
                               1                                                                                                                                                                                                                                  
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227
         Q4K977_PSEF5     - ---MAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVCTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPPFNAGSPDTAPASVVQQARQRAADSLHKRREITLRAAARLAA 227
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------DUF4066-3nonB01 B:11-167                                                                                                                                     --------------------------------------------------------------- Pfam domains (1)
           Pfam domains (2) ----------DUF4066-3nonB02 B:11-167                                                                                                                                     --------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author .....eeeeee.....hhhhhhhhhhhhh....eeeeeee...eeee.....eeee.ee........eeee....hhhhhh.hhhhhhhhhhhhh...eeeee.hhhhhhhhh......ee..hhhhhhhhhhhh.ee....eeee..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3non B   1 GSHMAVQIGFLLFPEVQQLDLTGPHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGVGALMEDPQALAFIRQQAARARYVTSVcTGSLVLGAAGLLQGKRATTHWAYHELLAPLGAIPVHERVVRDGNLLTGGGITAGIDFALTLAAELFDAATAQRVQLQLEYAPAPPFNAGSPDTAPASVVQQARQRAADSLHKRREITLRAAARLAA 230
                                    10        20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       170       180       190       200       210       220       230
                                                                                                                                 104-CSO
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3NON)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3NON)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Glutaminase_I (73)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3NON)

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  3non
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 Related Entries

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UniProtKB/TrEMBL
        Q4K977_PSEF5 | Q4K977: 3noo 3noq 3nor 3nov

(-) Related Entries Specified in the PDB File

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