3NKG - JenaLib

Title :   CRYSTAL STRUCTURE OF GEBA250068378 FROM SULFUROSPIRILLUM DELEYIANUM

Authors :   Y. Kim, N. Marshall, G. Cobb, J. Eisen, C. Kerfeld, A. Joachimiak, Midwe For Structural Genomics (Mcsg)

Date :   19 Jun 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Geba Target, Bata-Fold, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, N. Marshall, G. Cobb, J. Eisen, C. Kerfeld, A. Joachimiak
Crystal Structure Of Geba250068378 From Sulfurospirillum Deleyianum
To Be Published 2010
PubMed: search

Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN GEBA250068378
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21 MAGIC
	Expression System Taxid	:	511693
	Expression System Vector Type	:	PLASMID
	Gene	:	SDEL_1248
	Organism Scientific	:	SULFUROSPIRILLUM DELEYIANUM
	Organism Taxid	:	525898
	Strain	:	DSM 6946

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 12)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	ACY	5	Ligand/Ion	ACETIC ACID
2	GOL	3	Ligand/Ion	GLYCEROL
3	MSE	4	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	ACY	3	Ligand/Ion	ACETIC ACID
2	GOL	2	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	ACY	2	Ligand/Ion	ACETIC ACID
2	GOL	1	Ligand/Ion	GLYCEROL
3	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:123 , TYR A:128 , HOH A:192	BINDING SITE FOR RESIDUE ACY A 175
2	AC2	SOFTWARE	SER A:26 , TRP A:27 , SER A:136 , LEU A:137 , ASP A:138	BINDING SITE FOR RESIDUE GOL A 176
3	AC3	SOFTWARE	PRO A:1 , ASN A:2 , ILE A:4 , TYR A:29 , HOH A:195	BINDING SITE FOR RESIDUE ACY A 177
4	AC4	SOFTWARE	LYS A:111 , HOH A:293	BINDING SITE FOR RESIDUE ACY A 178
5	AC5	SOFTWARE	ASN A:116 , LEU A:117 , TYR A:118 , HOH A:265 , HOH A:277	BINDING SITE FOR RESIDUE GOL A 179
6	AC6	SOFTWARE	ASN B:123 , TYR B:128 , HOH B:194	BINDING SITE FOR RESIDUE ACY B 175
7	AC7	SOFTWARE	GLN B:103 , ILE B:113 , LEU B:137 , ASP B:138 , TYR B:142	BINDING SITE FOR RESIDUE ACY B 176
8	AC8	SOFTWARE	ASN B:58 , TYR B:60 , ASP B:91 , HOH B:205 , HOH B:227	BINDING SITE FOR RESIDUE GOL B 177

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:170
 aligned with D1B2F0_SULD5 | D1B2F0 from UniProtKB/TrEMBL  Length:190

    Alignment length:170
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
         D1B2F0_SULD5    19 NPNPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDGGLDGKRVWKFLGFNSYDPRDGKQVGYVDYRLAKSELGDLIDETYDCDGTVVPIKITIHQINQDNTKKLIADNLYMTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEMIGRKVDFTIYINKR 188
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee......eeeeeeeee...eeeeeeeee.........hhhhhhhhhhhh..ee......eee..hhhhhhhhhhhhh..........eeeeeeeeee.....eeeeeeeeeee........eeeeeeeee..eeeeeeeee...hhhhh...eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nkg A   0 APNPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDGGLDGKRVWKFLGFNSYDPRDGKQVGYVDYRLAKSELGDLIDETYDCDGTVVPIKITIHQINQDNTKKLIADNLYmTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEmIGRKVDFTIYINKR 169
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149     | 159       169
                                                                                                                                                 119-MSE                             155-MSE

Chain B from PDB  Type:PROTEIN  Length:170
 aligned with D1B2F0_SULD5 | D1B2F0 from UniProtKB/TrEMBL  Length:190

    Alignment length:170
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188
         D1B2F0_SULD5    19 NPNPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDGGLDGKRVWKFLGFNSYDPRDGKQVGYVDYRLAKSELGDLIDETYDCDGTVVPIKITIHQINQDNTKKLIADNLYMTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEMIGRKVDFTIYINKR 188
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.......eeeeeeeee...eeeeeeeee...hhhhhhhhhhhhhhhhhh..ee......eee..hhhhhhhhhhhhh..........eeeeeeeeee.....eeeeeeeeeee........eeeeeeeee..eeeeeeeee...hhhhh...eeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3nkg B   0 APNPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDGGLDGKRVWKFLGFNSYDPRDGKQVGYVDYRLAKSELGDLIDETYDCDGTVVPIKITIHQINQDNTKKLIADNLYmTKGNGSGAYTRDITTISLDKGKYIFRIENIEAFSEmIGRKVDFTIYINKR 169
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149     | 159       169
                                                                                                                                                 119-MSE                             155-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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