Chain A from PDB Type:PROTEIN Length:99
aligned with Q6FNZ9_CANGA | Q6FNZ9 from UniProtKB/TrEMBL Length:407
Alignment length:99
15 25 35 45 55 65 75 85 95
Q6FNZ9_CANGA 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYVVGLYDKQSGKINLYRAPVVTSKIVSKFSKNLK 104
SCOP domains --------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee.....eeee...........eeeeeee.....eeeeee...eeeeee.hhhhhhheeeeeeeee....eeeeeee.eeeeeeee....... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------- Transcript
3nff A 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYMVGLYDKQSGKINLYRAPVVTSKIVSKFSKNLK 104
15 25 35 45 55 65 75 85 95
Chain B from PDB Type:PROTEIN Length:110
aligned with Q6FQI3_CANGA | Q6FQI3 from UniProtKB/TrEMBL Length:243
Alignment length:115
34 44 54 64 74 84 94 104 114 124 134
Q6FQI3_CANGA 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLLKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPSEKKKETLKVATSKDNKSVYFDRVFTISET 139
SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eee.......hhhhh....eeeeeeeee...hhhhh.ee.......eeeeee..eeeeeee.hhh........eeeeee.--....eee....---.....eeeeeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
3nff B 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLMKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPS--KKETLKVATSK---SVYFDRVFTISET 139
34 44 54 64 74 84 94 104 | 114 |- | 134
110 | 123 127
113
Chain C from PDB Type:PROTEIN Length:93
aligned with Q6FNZ9_CANGA | Q6FNZ9 from UniProtKB/TrEMBL Length:407
Alignment length:93
15 25 35 45 55 65 75 85 95
Q6FNZ9_CANGA 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYVVGLYDKQSGKINLYRAPVVTSKIVSK 98
SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee.....eeee...........eeeeeee.....eeeeee...eeeeee.hhhhhhheeeeeeeee....eeeeee..eeeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------- Transcript
3nff C 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYMVGLYDKQSGKINLYRAPVVTSKIVSK 98
15 25 35 45 55 65 75 85 95
Chain D from PDB Type:PROTEIN Length:110
aligned with Q6FQI3_CANGA | Q6FQI3 from UniProtKB/TrEMBL Length:243
Alignment length:115
34 44 54 64 74 84 94 104 114 124 134
Q6FQI3_CANGA 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLLKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPSEKKKETLKVATSKDNKSVYFDRVFTISET 139
SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eee.......hhhhhhh..eeeeeeeee...hhhhh.ee.......eeeeee..eeeeeee.hhh........eeeeee.--...eeee....---.....eeeeeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
3nff D 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLMKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPS--KKETLKVATSK---SVYFDRVFTISET 139
34 44 54 64 74 84 94 104 | 114 |- | 134
110 | 123 127
113
Chain E from PDB Type:PROTEIN Length:93
aligned with Q6FNZ9_CANGA | Q6FNZ9 from UniProtKB/TrEMBL Length:407
Alignment length:93
15 25 35 45 55 65 75 85 95
Q6FNZ9_CANGA 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYVVGLYDKQSGKINLYRAPVVTSKIVSK 98
SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .eeeeeee.....eeee...........eeeeeee.....eeeeee...eeeeee.hhhhhhheeeeeeeee....eeeeee..eeeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------- Transcript
3nff E 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYMVGLYDKQSGKINLYRAPVVTSKIVSK 98
15 25 35 45 55 65 75 85 95
Chain F from PDB Type:PROTEIN Length:110
aligned with Q6FQI3_CANGA | Q6FQI3 from UniProtKB/TrEMBL Length:243
Alignment length:115
34 44 54 64 74 84 94 104 114 124 134
Q6FQI3_CANGA 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLLKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPSEKKKETLKVATSKDNKSVYFDRVFTISET 139
SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......eee.......hhhhhhh..eeeeeeeee...hhhhh.ee.......eeee......eeeee.hhh........eeeeee.--....eee....---.....eeeeeee. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
3nff F 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLMKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPS--KKETLKVATSK---SVYFDRVFTISET 139
34 44 54 64 74 84 94 104 | 114 |- | 134
110 | 123 127
113
Chain G from PDB Type:PROTEIN Length:93
aligned with Q6FNZ9_CANGA | Q6FNZ9 from UniProtKB/TrEMBL Length:407
Alignment length:93
15 25 35 45 55 65 75 85 95
Q6FNZ9_CANGA 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYVVGLYDKQSGKINLYRAPVVTSKIVSK 98
SCOP domains --------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ----------------------RNA_pol_I_A49-3nffG01 G:28-98 Pfam domains (1)
Pfam domains (2) ----------------------RNA_pol_I_A49-3nffG02 G:28-98 Pfam domains (2)
Pfam domains (3) ----------------------RNA_pol_I_A49-3nffG03 G:28-98 Pfam domains (3)
Pfam domains (4) ----------------------RNA_pol_I_A49-3nffG04 G:28-98 Pfam domains (4)
Sec.struct. author .eeeeeee.....eeee...........eeeeeee.....eeeeee...eeeeee.hhhhhhheeeeeeeee....eeeeee..eeeeeeee. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------- Transcript
3nff G 6 SIAIDSYQEDPSVVVSNFFKGVRVPKDTEFQLYKKRKQDQFVLHGENERLEYDGETDELTTKTNQYMVGLYDKQSGKINLYRAPVVTSKIVSK 98
15 25 35 45 55 65 75 85 95
Chain H from PDB Type:PROTEIN Length:111
aligned with Q6FQI3_CANGA | Q6FQI3 from UniProtKB/TrEMBL Length:243
Alignment length:116
34 44 54 64 74 84 94 104 114 124 134
Q6FQI3_CANGA 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLLKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPSEKKKETLKVATSKDNKSVYFDRVFTISETA 140
SCOP domains -------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains (1) ---------------------RNA_polI_A34-3nffH01 H:46-140 Pfam domains (1)
Pfam domains (2) ---------------------RNA_polI_A34-3nffH02 H:46-140 Pfam domains (2)
Pfam domains (3) ---------------------RNA_polI_A34-3nffH03 H:46-140 Pfam domains (3)
Pfam domains (4) ---------------------RNA_polI_A34-3nffH04 H:46-140 Pfam domains (4)
Sec.struct. author ......eee.......hhhhhh...eeeeeeeee...hhhhh.ee.......eeee......eeeee............eeeeee.--...eeee....---.....eeeeeee.. Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
3nff H 25 YQPPSDYKQCKHLKSFPVSELKGDNKELWLMKVPANIDISQLKSLPLDTDATVSTVELGSKNFNVLQNTSTQEGSDNTNLSLLIPS--KKETLKVATSK---SVYFDRVFTISETA 140
34 44 54 64 74 84 94 104 | 114 |- | 134
110 | 123 127
113
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |