3N7T - JenaLib

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Title :   CRYSTAL STRUCTURE OF A MACROPHAGE BINDING PROTEIN FROM COCCIDIOIDES IMMITIS

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   27 May 10 (Deposition) - 16 Jun 10 (Release) - 16 Jun 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Macrophage, Pathogenic Fungus, Coccidioidomycosis, Valley Fever, Meningitis, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. E. Edwards, J. Abendroth, B. Sankaran, Seattle Structural Genomics Center For Infectious Disease (Ssgcid)
Crystal Structure Of A Macrophage Binding Protein From Coccidioides Immitis
To Be Published
PubMed: search

Molecule 1 - MACROPHAGE BINDING PROTEIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	AVA0421
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	MBP-1
	Organism Common	:	VALLEY FEVER FUNGUS
	Organism Scientific	:	COCCIDIOIDES IMMITIS
	Organism Taxid	:	5501

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	CL	3	Ligand/Ion	CHLORIDE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:35 , PRO A:223 , GLN A:224 , ALA A:226 , THR A:227	BINDING SITE FOR RESIDUE EDO A 244
2	AC2	SOFTWARE	THR A:169 , LYS A:170 , ARG A:182	BINDING SITE FOR RESIDUE CL A 245
3	AC3	SOFTWARE	LYS A:7 , GLY A:215 , HOH A:349	BINDING SITE FOR RESIDUE CL A 247
4	AC4	SOFTWARE	ARG A:216 , HOH A:260	BINDING SITE FOR RESIDUE PO4 A 248

(no "SS Bond" information available for 3N7T)

(no "Cis Peptide Bond" information available for 3N7T)

(no "SAP(SNP)/Variant" information available for 3N7T)

(no "PROSITE Motif" information available for 3N7T)

(no "Exon" information available for 3N7T)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:241
 aligned with Q9HEU1_COCIT | Q9HEU1 from UniProtKB/TrEMBL  Length:243

    Alignment length:241
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242 
         Q9HEU1_COCIT     3 PLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVNE 243
               SCOP domains d3n7ta_ A: automated matches                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------DJ-1_PfpI-3n7tA01 A:64-238                                                                                                                                                     ----- Pfam domains
         Sec.struct. author ....eeeee.................hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhhhhh...hhhhhhhhhh.ee.hhhhhhhh.eeee....hhhhhh..hhhhhhhhhhhhhh..eeeee.hhhhhhhhh............ee...hhhhhhhh.hhhhhhhh...hhhhhhhhh..ee..........eeee..eeee.hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n7t A   3 PLPRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHFMEKMNKQVFKAGDLAPHDYGLMFVCGGHGALYDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGIHDENGDSVIKDKTVTGFTTKGEIMIKVIDKMREDHLHTIADMAQTANAEYVPPEDPWDDFCKVDGRIVTGANPQSATNTARDTIKVYEGIVNE 243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: Class I glutamine amidotransferase-like (173)

Family: automated matches (40)

Protein domain: automated matches (40)

Fungus (Coccidioides immitis) [TaxId: 5501] (1)

d3n7ta_

(no "CATH Domain" information available for 3N7T)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Glutaminase_I (73)

Family: DJ-1_PfpI (29)

Coccidioides immitis (Valley fever fungus) (1)

DJ-1_PfpI-3n7tA01

A:64-238

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 3N7T)

Asymmetric Unit
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Biological Units
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Description

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Ligands, Modified Residues, Ions (3, 5)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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