3N77 - JenaLib

Title :   CRYSTAL STRUCTURE OF IDP01880, PUTATIVE NTP PYROPHOSPHOHYDROLASE OF SALMONELLA TYPHIMURIUM LT2

Authors :   J. Frydrysiak, D. R. Cooper, U. Derewenda, W. F. Anderson, Z. S. Derewen Integrated Center For Structure And Function Innovation (Is Center For Structural Genomics Of Infectious Diseases (Csgi

Date :   26 May 10 (Deposition) - 18 Aug 10 (Release) - 18 Aug 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.86

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A (1x),B (1x)

Keywords :   Structural Genomics, Isfi, Surface Entropy Reduction, Psi-2, Protein Structure Initiative, Integrated Center For Structure And Function Innovation, Hydrolase, Center For Structural Genomics Of Infectious Diseases (Csgid) (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Frydrysiak, D. R. Cooper, U. Derewenda, Z. S. Derewenda
Crystal Structure Of Idp01880, Putative Ntp Pyrophosphohydrolase Of Salmonella Typhimurium Lt2
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDI_SALTY	1-141	2	A:1-141 B:1-141
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDI_SALTY	38-59	2	A:38-59 B:38-59

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDI_SALTY	1-141	1	A:1-141 -
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDI_SALTY	38-59	1	A:38-59 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDI_SALTY	1-141	1	- B:1-141
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDI_SALTY	38-59	1	- B:38-59

Biological Unit 3 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	NUDIX	PS51462	Nudix hydrolase domain profile.	NUDI_SALTY	1-141	2	A:1-141 B:1-141
2	NUDIX_BOX	PS00893	Nudix box signature.	NUDI_SALTY	38-59	2	A:38-59 B:38-59

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:141
 aligned with NUDI_SALTY | Q8ZNF5 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 
           NUDI_SALTY     1 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL 141
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeeee..........ee...ee.....hhhhhhhhhhhhhhh....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..........eeeeeeehhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) NUDIX  PDB: A:1-141 UniProt: 1-141                                                                                                            PROSITE (1)
                PROSITE (2) -------------------------------------NUDIX_BOX  PDB: A:38-5---------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n77 A   1 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVAPAALALYDLNVATRHTLALKGLL 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with NUDI_SALTY | Q8ZNF5 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 
           NUDI_SALTY     1 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL 141
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -NUDIX-3n77B01 B:2-140                                                                                                                      - Pfam domains (1)
           Pfam domains (2) -NUDIX-3n77B02 B:2-140                                                                                                                      - Pfam domains (2)
         Sec.struct. author .eeeeeeeeeeee..eeeeeee..........ee...ee.....hhhhhhhhhhhhhhh....eeeeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..........eeeeeeehhhhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) NUDIX  PDB: B:1-141 UniProt: 1-141                                                                                                            PROSITE (1)
                PROSITE (2) -------------------------------------NUDIX_BOX  PDB: B:38-5---------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n77 B   1 MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVAPAALALYDLNVATRHTLALKGLL 141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 2)

Gene Ontology (7, 7)

Asymmetric Unit(hide GO term definitions)

Chain A,B (NUDI_SALTY | Q8ZNF5)


GO:0047840	dCTP diphosphatase activity	Catalysis of the reaction: dCTP + H2O = dCMP + diphosphate.
GO:0004170	dUTP diphosphatase activity	Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
GO:0047429	nucleoside-triphosphate diphosphatase activity	Catalysis of the reaction: H2O + a nucleoside triphosphate = diphosphate + a nucleotide.

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