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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE 4-HYDROXY-2-OXOGLUTARATE ALDOLASE FROM BACILLUS CEREUS
 
Authors :  R. Cabello, M. Chruszcz, X. Xu, M. D. Zimmerman, H. Cui, A. Savchenko, A. A. Joachimiak, W. Minor, Midwest Center For Structural Genomics
Date :  26 May 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Cabello, M. Chruszcz, X. Xu, M. D. Zimmerman, H. Cui, A. Savchenko, A. Edwards, A. Joachimiak, W. Minor
Crystal Structure Of A Putative 4-Hydroxy-2-Oxoglutarate Aldolase From Bacillus Cereus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE 4-HYDROXY-2-OXOGLUTARATE ALDOLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV LIC
    Expression System Strain: BL21-GOLD (DE3) (STRATAGENE)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BCE_5001
    Organism Scientific: BACILLUS CEREUS
    Organism Taxid: 222523
    Strain: ATCC 10987

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric Unit (2, 9)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:167 , GLY A:193 , GLY A:194 , HOH A:354BINDING SITE FOR RESIDUE CL A 252
2AC2SOFTWARELEU A:70 , GLY A:73 , ASN A:94 , LYS A:162 , HOH A:373BINDING SITE FOR RESIDUE CL A 253
3AC3SOFTWAREPRO B:165 , LYS B:167 , GLY B:193 , GLY B:194BINDING SITE FOR RESIDUE CL B 252

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3N73)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Phe A:164 -Pro A:165
2Phe B:164 -Pro B:165

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3N73)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3N73)

(-) Exons   (0, 0)

(no "Exon" information available for 3N73)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
 aligned with Q72YM0_BACC1 | Q72YM0 from UniProtKB/TrEMBL  Length:251

    Alignment length:250
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251
         Q72YM0_BACC1     2 TNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAMKAYGKEIEDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGGKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVERVIPHVYSSIIDKETGNTKVEDVRELLAVVKKLVDQYA 251
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhh..eeee..hhhhhhhhhhhh...eeeeee.hhh.hhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhh......ee..hhhhhhhhhhhh.....eeeeee.......eee...hhhhhh.....eeehhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhh.........hhhhh.......hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n73 A   2 TNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAmKAYGKEIEDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGGKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDmGGNSLKYFPmKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVERVIPHVYSSIIDKETGNTKVEDVRELLAVVKKLVDQYA 251
                                    11        21        31        41        51   |    61        71        81        91       101       111       121       131       141       151    |  161    |  171       181       191       201       211       221       231       241       251
                                                                                55-MSE                                                                                              156-MSE   166-MSE                                                                                 


Chain B from PDB  Type:PROTEIN  Length:249
 aligned with Q72YM0_BACC1 | Q72YM0 from UniProtKB/TrEMBL  Length:251

    Alignment length:249
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241         
         Q72YM0_BACC1     2 TNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAMKAYGKEIEDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGGKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVERVIPHVYSSIIDKETGNTKVEDVRELLAVVKKLVDQY 250
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------DUF1341-3n73B01 B:9-227                                                                                                                                                                                                    ----------------------- Pfam domains (1)
           Pfam domains (2) -------DUF1341-3n73B02 B:9-227                                                                                                                                                                                                    ----------------------- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhh..eeee..hhhhhhhhhhhh...eeeeee.hhh.hhhhhhhhhhhhhhhh...eeee......hhhhhhhhhhhhh...ee..hhhhhhhhhhhh.....eeeeee.......eee...hhhhhh.....eeehhhhhhhhhhh...eeee.......hhhhhhhhhhhhhhhh.eeee.......hhhhhhhhhhhh.......eehhhhh.......hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3n73 B   2 TNIQKRFYKGRVALNVLANNIENAKDIFEAAEGYVVVGVLSKDYPTVEEAVTAmKAYGKEIEDAVSIGLGAGDNRQAAVVAEIAKHYPGSHINQVFPSVGATRANLGGKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIVPIKTAIALVRDmGGNSLKYFPmKGLAHEEEYRAVAKACAEEGFALEPTGGIDKENFETIVRIALEANVERVIPHVYSSIIDKETGNTKVEDVRELLAVVKKLVDQY 250
                                    11        21        31        41        51   |    61        71        81        91       101       111       121       131       141       151    |  161    |  171       181       191       201       211       221       231       241         
                                                                                55-MSE                                                                                              156-MSE   166-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3N73)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3N73)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: TIM_barrel (694)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3N73)

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  3n73
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