3N1D - JenaLib

Title :   CRYSTAL STRUCTURE OF THE COMPLEX OF TYPE I RIBOSOME INACTIVATING PROTEIN WITH RIBOSE AT 1.7A RESOLUTION

Authors :   N. Pandey, G. S. Kushwaha, M. Sinha, P. Kaur, C. Betzel, S. Sharma, T. P. S

Date :   15 May 10 (Deposition) - 23 Jun 10 (Release) - 23 Jun 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.70

Chains :   Asym./Biol. Unit : A

Keywords :   Rip, Rna N-Glycosidase, Plant Protein, Ribose, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Pandey, G. S. Kushwaha, M. Sinha, P. Kaur, C. Betzel, S. Sharma, T. P. Singh
Crystal Structure Of The Complex Of Type I Ribosome Inactivating Protein With Ribose At 1. 7A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - RIBOSOME INACTIVATING PROTEIN
	Chains	:	A
	EC Number	:	3.2.2.22
	Organism Common	:	BALSAM APPLE
	Organism Scientific	:	MOMORDICA BALSAMINA
	Organism Taxid	:	3672

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Asymmetric/Biological Unit (4, 5)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NAG	2	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
3	PEG	1	Ligand/Ion	DI(HYDROXYETHYL)ETHER
4	RIP	1	Ligand/Ion	RIBOSE(PYRANOSE FORM)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:226 , ASN A:227 , THR A:229 , NAG A:248 , HOH A:296	BINDING SITE FOR RESIDUE NAG A 247
2	AC2	SOFTWARE	NAG A:247	BINDING SITE FOR RESIDUE NAG A 248
3	AC3	SOFTWARE	TYR A:70 , GLY A:109 , ASN A:110 , TYR A:111 , GLU A:160 , ARG A:163 , PEG A:251 , HOH A:263 , HOH A:439	BINDING SITE FOR RESIDUE RIP A 249
4	AC4	SOFTWARE	LEU A:6 , ALA A:9 , ARG A:101 , ILE A:103 , ALA A:175 , HOH A:300 , HOH A:308	BINDING SITE FOR RESIDUE GOL A 250
5	AC5	SOFTWARE	VAL A:69 , TYR A:70 , ILE A:71 , PHE A:83 , GLU A:85 , GLY A:109 , ILE A:155 , ALA A:159 , RIP A:249 , HOH A:323	BINDING SITE FOR RESIDUE PEG A 251

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains d3n1da_ A: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhh..eeeee..eeee....hhhh.eeeeeee.....eeeeeee.....eeeeee..eeee..hhhhhhhhh.......eeee.....hhhhhhhhhh.hhhhh..hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....eeeeeeeee.....eeeeee..hhhhhh......hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3n1d A   1 DVSFRLSGADPSSYGMFIKDLRNALPHTEKVYNIPLLLPSVSGAGRYLLMHLFNYDGNTITVAVDVTNVYIMGYLALTTSYFFNEPAADLASQYVFRSARRKITLPYSGNYERLQIAAGKPREKIPIGLPALDTAISTLLHYDSTAAAGALLVLIQTTAEAARFKYIEQQIQERAYRDEVPSSATISLENSWSGLSKQIQLAQGNNGVFRTPTVLVDSGGNRVQITNVTSNVVTSNIQLLLNTKNI 246
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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		RIP	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
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		AC2	[ RasMol ]	+environment [ RasMol ]
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	Cis Peptide Bonds
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Still Images

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Description