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(-) Description

Title :  CRYSTAL STRUCTURE OF A PROTEIN WITH UNKNOWN FUNCTION (BF3112) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Apr 10  (Deposition) - 09 Jun 10  (Release) - 09 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Protein With Unknown Function (Bf3112) From Bacteroides Fragilis Nctc 9343 At 1. 90 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF3112
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343
    Synonym: PUTATIVE EXPORTED PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MSE4Mod. Amino AcidSELENOMETHIONINE
3PGR3Ligand/IonR-1,2-PROPANEDIOL

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMSE A:38 , HOH A:222BINDING SITE FOR RESIDUE CL A 1
2AC2SOFTWAREHIS A:34BINDING SITE FOR RESIDUE CL A 2
3AC3SOFTWAREARG A:100BINDING SITE FOR RESIDUE CL A 3
4AC4SOFTWAREHOH A:15 , SER A:68 , ALA A:156 , LEU A:157 , GLU A:162BINDING SITE FOR RESIDUE PGR A 4
5AC5SOFTWAREHOH A:15 , VAL A:44 , LYS A:66 , TYR A:67 , TYR A:139 , ASP A:155BINDING SITE FOR RESIDUE PGR A 5
6AC6SOFTWAREGLY A:29 , LYS A:30 , LEU A:43 , TYR A:69 , HOH A:182BINDING SITE FOR RESIDUE PGR A 6

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MSW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MSW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:139
 aligned with Q5LAR6_BACFN | Q5LAR6 from UniProtKB/TrEMBL  Length:169

    Alignment length:139
                                    34        44        54        64        74        84        94       104       114       124       134       144       154         
         Q5LAR6_BACFN    25 ATNNGKQFIHNDTMEGGKLVCREIYAMNDAASGILNPVKMYKYSYDTDQQKTVKSTYAWNIFKNTWETESRTVISRYETETSVEYSVWNKEKGSFDLSKKYIYITDNNNQLIAQYAYKMNSRTNQWILEKDALTPIYEN 163
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -DUF3836-3mswA01 A:26-130                                                                                 --------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee..eeeeeeeeee.......eeeeeeeeeeee....eeeeeeeeee....eeeeeeeeeeeee..eeeeeeeee......eeeeeeeeeee.....eeeeeeeeee....eeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3msw A   0 GTNNGKQFIHNDTmEGGKLVCREIYAmNDAASGILNPVKmYKYSYDTDQQKTVKSTYAWNIFKNTWETESRTVISRYETETSVEYSVWNKEKGSFDLSKKYIYITDNNNQLIAQYAYKmNSRTNQWILEKDALTPIYEN 163
                            ||      34   |    44      | 54        64        74        84        94       104       114       124       134       144       154         
                            ||          38-MSE       51-MSE       64-MSE                                                                        143-MSE                
                            0|                                                                                                                                         
                            26
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MSW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MSW)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF3836] (1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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