3MLE - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF DETHIOBIOTIN SYNTHETASE (BIOD) FROM HELICOBACTER PYLORI COCRYSTALLIZED WITH ATP

Authors :   R. Nicholls, P. J. Porebski, M. M. Klimecka, M. Chruszcz, K. Murzyn, A. Joachimiak, G. Murshudov, W. Minor, Midwest Center For Structu Genomics (Mcsg)

Date :   16 Apr 10 (Deposition) - 19 May 10 (Release) - 27 Mar 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Dtbs, Dethiobiotin Synthetase, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. J. Porebski, M. Klimecka, M. Chruszcz, R. A. Nicholls, K. Murzyn, M. E. Cuff, X. Xu, M. Cymborowski, G. N. Murshudov, A. Savchenko, A. Edwards, W. Minor
Structural Characterization Of Helicobacter Pylori Dethiobiotin Synthetase Reveals Differences Between Family Members.
Febs J. V. 279 1093 2012
PubMed-ID: 22284390 | Reference-DOI: 10.1111/J.1742-4658.2012.08506.X

Molecule 1 - DETHIOBIOTIN SYNTHETASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	6.3.3.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P11
	Expression System Strain	:	BL21-GOLD(DE3) MAGIC
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	BIOD, HP0029, HP_0029
	Organism Common	:	CAMPYLOBACTER PYLORI
	Organism Scientific	:	HELICOBACTER PYLORI
	Organism Taxid	:	85962
	Strain	:	26695
	Synonym	:	DETHIOBIOTIN SYNTHASE, DTB SYNTHETASE, DTBS

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 32)

No.	Name	Count	Type	Full Name
1	8AC	6	Ligand/Ion	8-AMINOOCTANOIC ACID
2	ADP	6	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	CL	3	Ligand/Ion	CHLORIDE ION
4	MG	6	Ligand/Ion	MAGNESIUM ION
5	NO3	3	Ligand/Ion	NITRATE ION
6	PO4	8	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (4, 7)

No.	Name	Count	Type	Full Name
1	8AC	2	Ligand/Ion	8-AMINOOCTANOIC ACID
2	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NO3	1	Ligand/Ion	NITRATE ION
6	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (4, 9)

No.	Name	Count	Type	Full Name
1	8AC	2	Ligand/Ion	8-AMINOOCTANOIC ACID
2	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NO3	1	Ligand/Ion	NITRATE ION
6	PO4	4	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (4, 7)

No.	Name	Count	Type	Full Name
1	8AC	2	Ligand/Ion	8-AMINOOCTANOIC ACID
2	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	MG	-1	Ligand/Ion	MAGNESIUM ION
5	NO3	1	Ligand/Ion	NITRATE ION
6	PO4	2	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (32, 32)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:9 , LYS A:13 , LYS A:35 , ASP A:50 , GLU A:116 , ALA A:118 , GLY A:119 , MG A:222 , ADP A:226 , 8AC C:224	BINDING SITE FOR RESIDUE PO4 A 221
02	AC2	SOFTWARE	THR A:14 , ASP A:50 , GLU A:116 , PO4 A:221 , ADP A:226	BINDING SITE FOR RESIDUE MG A 222
03	AC3	SOFTWARE	VAL A:41 , ASN A:42 , ASP A:43 , ARG A:74 , TYR A:75 , HIS A:76	BINDING SITE FOR RESIDUE NO3 A 223
04	AC4	SOFTWARE	GLN A:22 , GLN B:22	BINDING SITE FOR RESIDUE CL A 224
05	AC5	SOFTWARE	LEU A:150 , GLY A:151 , LEU A:152 , ILE A:153 , ASN A:154 , THR C:9 , THR C:39 , SER C:79 , PO4 C:221	BINDING SITE FOR RESIDUE 8AC A 225
06	AC6	SOFTWARE	ASN A:10 , ALA A:11 , GLY A:12 , LYS A:13 , THR A:14 , THR A:15 , GLU A:116 , ASN A:175 , GLN A:206 , PO4 A:221 , MG A:222 , HOH A:230 , ARG B:63	BINDING SITE FOR RESIDUE ADP A 226
07	AC7	SOFTWARE	THR B:9 , LYS B:13 , LYS B:35 , ASP B:50 , GLU B:116 , ALA B:118 , GLY B:119 , MG B:222 , PO4 B:224 , ADP B:226 , 8AC D:224	BINDING SITE FOR RESIDUE PO4 B 221
08	AC8	SOFTWARE	THR B:14 , LYS B:35 , ASP B:50 , GLU B:116 , PO4 B:221 , PO4 B:224 , ADP B:226	BINDING SITE FOR RESIDUE MG B 222
09	AC9	SOFTWARE	VAL B:41 , ASN B:42 , ASP B:43 , ARG B:74 , HIS B:76	BINDING SITE FOR RESIDUE NO3 B 223
10	BC1	SOFTWARE	ASN B:10 , ALA B:11 , GLY B:12 , LYS B:13 , THR B:14 , GLU B:116 , PO4 B:221 , MG B:222	BINDING SITE FOR RESIDUE PO4 B 224
11	BC2	SOFTWARE	GLY B:151 , LEU B:152 , ILE B:153 , ASN B:154 , THR D:9 , THR D:39 , SER D:79 , ALA D:80 , PO4 D:221	BINDING SITE FOR RESIDUE 8AC B 225
12	BC3	SOFTWARE	ARG A:63 , ASN B:10 , ALA B:11 , GLY B:12 , LYS B:13 , THR B:14 , THR B:15 , GLU B:116 , ASN B:175 , GLN B:206 , PO4 B:221 , MG B:222	BINDING SITE FOR RESIDUE ADP B 226
13	BC4	SOFTWARE	8AC A:225 , THR C:9 , LYS C:13 , LYS C:35 , ASP C:50 , GLU C:116 , ALA C:118 , GLY C:119 , MG C:222 , ADP C:225	BINDING SITE FOR RESIDUE PO4 C 221
14	BC5	SOFTWARE	THR C:14 , ASP C:50 , GLU C:116 , PO4 C:221 , ADP C:225	BINDING SITE FOR RESIDUE MG C 222
15	BC6	SOFTWARE	GLN C:22 , GLN E:22 , ASP E:57	BINDING SITE FOR RESIDUE CL C 223
16	BC7	SOFTWARE	THR A:9 , THR A:39 , SER A:79 , VAL A:123 , PO4 A:221 , LEU C:150 , GLY C:151 , LEU C:152 , ILE C:153 , ASN C:154	BINDING SITE FOR RESIDUE 8AC C 224
17	BC8	SOFTWARE	ASN C:10 , ALA C:11 , GLY C:12 , LYS C:13 , THR C:14 , THR C:15 , GLU C:116 , ASN C:175 , LYS C:177 , PO4 C:221 , MG C:222 , HOH C:232 , ARG E:63	BINDING SITE FOR RESIDUE ADP C 225
18	BC9	SOFTWARE	8AC B:225 , THR D:9 , LYS D:13 , LYS D:35 , ASP D:50 , GLU D:116 , ALA D:118 , GLY D:119 , MG D:222 , PO4 D:223 , ADP D:225	BINDING SITE FOR RESIDUE PO4 D 221
19	CC1	SOFTWARE	THR D:14 , LYS D:35 , ASP D:50 , GLU D:116 , PO4 D:221 , PO4 D:223 , ADP D:225	BINDING SITE FOR RESIDUE MG D 222
20	CC2	SOFTWARE	ASN D:10 , ALA D:11 , GLY D:12 , LYS D:13 , THR D:14 , GLU D:116 , PO4 D:221 , MG D:222	BINDING SITE FOR RESIDUE PO4 D 223
21	CC3	SOFTWARE	THR B:9 , THR B:39 , VAL B:123 , PO4 B:221 , GLY D:151 , LEU D:152 , ILE D:153 , ASN D:154	BINDING SITE FOR RESIDUE 8AC D 224
22	CC4	SOFTWARE	ASN D:10 , ALA D:11 , GLY D:12 , LYS D:13 , THR D:14 , THR D:15 , GLU D:116 , ASN D:175 , LYS D:177 , PO4 D:221 , MG D:222 , ARG F:63	BINDING SITE FOR RESIDUE ADP D 225
23	CC5	SOFTWARE	THR E:9 , LYS E:13 , LYS E:35 , ASP E:50 , GLU E:116 , GLY E:119 , MG E:222 , ADP E:223 , HOH E:236 , 8AC F:225	BINDING SITE FOR RESIDUE PO4 E 221
24	CC6	SOFTWARE	THR E:14 , LYS E:35 , ASP E:50 , GLU E:116 , PO4 E:221 , ADP E:223 , HOH E:236	BINDING SITE FOR RESIDUE MG E 222
25	CC7	SOFTWARE	ARG C:63 , ASN E:10 , ALA E:11 , GLY E:12 , LYS E:13 , THR E:14 , THR E:15 , GLU E:116 , ASN E:175 , LYS E:177 , GLN E:206 , PO4 E:221 , MG E:222 , HOH E:228 , HOH E:229 , HOH E:236	BINDING SITE FOR RESIDUE ADP E 223
26	CC8	SOFTWARE	LEU E:150 , GLY E:151 , LEU E:152 , ILE E:153 , ASN E:154 , THR F:9 , THR F:39 , SER F:79 , GLY F:119 , VAL F:123 , PO4 F:221	BINDING SITE FOR RESIDUE 8AC E 224
27	CC9	SOFTWARE	8AC E:224 , THR F:9 , LYS F:13 , LYS F:35 , ASP F:50 , GLU F:116 , ALA F:118 , GLY F:119 , MG F:222 , ADP F:226	BINDING SITE FOR RESIDUE PO4 F 221
28	DC1	SOFTWARE	THR F:14 , ASP F:50 , GLU F:116 , PO4 F:221 , ADP F:226	BINDING SITE FOR RESIDUE MG F 222
29	DC2	SOFTWARE	ASN F:42 , ASP F:43 , ARG F:74 , HIS F:76	BINDING SITE FOR RESIDUE NO3 F 223
30	DC3	SOFTWARE	GLN D:22 , GLN F:22	BINDING SITE FOR RESIDUE CL F 224
31	DC4	SOFTWARE	THR E:9 , THR E:39 , PO4 E:221 , LEU F:150 , GLY F:151 , ILE F:153 , ASN F:154	BINDING SITE FOR RESIDUE 8AC F 225
32	DC5	SOFTWARE	ARG D:63 , ASN F:10 , ALA F:11 , GLY F:12 , LYS F:13 , THR F:14 , THR F:15 , GLU F:116 , ASN F:175 , LYS F:177 , PO4 F:221 , MG F:222	BINDING SITE FOR RESIDUE ADP F 226

(no "SS Bond" information available for 3MLE)

(no "Cis Peptide Bond" information available for 3MLE)

(no "SAP(SNP)/Variant" information available for 3MLE)

(no "PROSITE Motif" information available for 3MLE)

(no "Exon" information available for 3MLE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:221
 aligned with BIOD_HELPY | O24872 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:221
                              1                                                                                                                                                                                                                      218 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218 
           BIOD_HELPY     - --MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhh...eeee..eee.........hhhhhhhhhhh......hhhhhh.eee....hhhhhhhhhh.....hhhhhhhhhhhhhh...eeeeeeeee.........hhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh.....ee...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mle A  -1 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALKG 219
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218

Chain B from PDB  Type:PROTEIN  Length:224
 aligned with BIOD_HELPY | O24872 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:224
                                1                                                                                                                                                                                                                      218  
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216 |  
           BIOD_HELPY     - ----MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhhhhh...eeee..ee..........hhhhhhhhhhh......hhhhhh.ee.....hhhhhhhhhh.....hhhhhhhhhhhhhh...eeeeeeeee.........hhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhh.....ee...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mle B  -3 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALKGS 220
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216

Chain C from PDB  Type:PROTEIN  Length:223
 aligned with BIOD_HELPY | O24872 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:223
                                1                                                                                                                                                                                                                      218 
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216 | 
           BIOD_HELPY     - ----MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhhhhh...eeee..ee..........hhhhhhhhhhh......hhhhhh.ee.....hhhhhhhhhh.....hhhhhhhhhhhhhh...eeeeeeeee.........hhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee......hhhhhhhhhhhhhhhhh.....ee...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mle C  -3 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALKG 219
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216

Chain D from PDB  Type:PROTEIN  Length:223
 aligned with BIOD_HELPY | O24872 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:223
                                1                                                                                                                                                                                                                      218 
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216 | 
           BIOD_HELPY     - ----MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhhhhh...eeee..eee.........hhhhhhhhhhh......hhhhhh.eee....hhhhhhhhhh.....hhhhhhhhhhhhhh...eeeeeeeee.........hhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhhh....ee...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mle D  -3 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALKG 219
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216

Chain E from PDB  Type:PROTEIN  Length:221
 aligned with BIOD_HELPY | O24872 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:221
                              1                                                                                                                                                                                                                      218 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218 
           BIOD_HELPY     - --MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK-   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.....hhhhhhhhhhhhhhhh...eeee..eee.........hhhhhhhhhhh......hhhhhh.eee....hhhhhhhhhh.....hhhhhhhhhhhhhh...eeeee.............hhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh.....ee...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mle E  -1 GHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALKG 219
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218

Chain F from PDB  Type:PROTEIN  Length:223
 aligned with BIOD_HELPY | O24872 from UniProtKB/Swiss-Prot  Length:218

    Alignment length:223
                                1                                                                                                                                                                                                                      218 
                                |    6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216 | 
           BIOD_HELPY     - ----MLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALK-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----AAA_26-3mleF01 F:1-208                                                                                                                                                                                          ----------- Pfam domains (1)
           Pfam domains (2) ----AAA_26-3mleF02 F:1-208                                                                                                                                                                                          ----------- Pfam domains (2)
           Pfam domains (3) ----AAA_26-3mleF03 F:1-208                                                                                                                                                                                          ----------- Pfam domains (3)
           Pfam domains (4) ----AAA_26-3mleF04 F:1-208                                                                                                                                                                                          ----------- Pfam domains (4)
           Pfam domains (5) ----AAA_26-3mleF05 F:1-208                                                                                                                                                                                          ----------- Pfam domains (5)
           Pfam domains (6) ----AAA_26-3mleF06 F:1-208                                                                                                                                                                                          ----------- Pfam domains (6)
         Sec.struct. author ...eeeeeee.....hhhhhhhhhhhhhhhh...eeee..eee.........hhhhhhhhhhh......hhhhhh.eee....hhhhhhhhhh.....hhhhhhhhhhhhhh...eeeeeeeee.........hhhhhhhhh..eeeeee....hhhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhhhh.....ee...hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mle F  -3 FQGHMLFISATNTNAGKTTCARLLAQYCNACGVKTILLKPIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFTKTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGNNTAFHSISLPYIELFNTRSNNPIVIFQQSLKVLMSFALKG 219
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3MLE)

(no "CATH Domain" information available for 3MLE)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: P-loop_NTPase (1112)

Family: AAA_26 (9)

Helicobacter pylori (Campylobacter pylori) (8)

1a	AAA_26-3mleF01	F:1-208
1b	AAA_26-3mleF02	F:1-208
1c	AAA_26-3mleF03	F:1-208
1d	AAA_26-3mleF04	F:1-208
1e	AAA_26-3mleF05	F:1-208
1f	AAA_26-3mleF06	F:1-208

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (BIOD_HELPY | O24872)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0004141	dethiobiotin synthase activity	Catalysis of the reaction: 7,8-diaminononanoate + ATP + CO(2) = ADP + dethiobiotin + 4 H(+) + phosphate.
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0009102	biotin biosynthetic process	The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
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	3mle
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	BIOD_HELPY \| O24872	:	2qmo 3qxc 3qxh 3qxj 3qxs 3qxx 3qy0

(no "Related Entries Specified in the PDB File" available for 3MLE)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 32)

Sites (32, 32)

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