Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF ACETYLPOLYAMINE AMINOHYDROLASE FROM BURKHOLDERIA PSEUDOMALLEI, IODIDE SOAK
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  31 Mar 10  (Deposition) - 21 Apr 10  (Release) - 06 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Seattle Structural Genomics Center For Infectious Disease (Ssgcid), Acetylpolyamine Aminohydrolase, Histone Deacetylase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Abendroth, A. S. Gardberg, J. I. Robinson, J. S. Christensen, B. L. Staker, P. J. Myler, L. J. Stewart, T. E. Edwards
Sad Phasing Using Iodide Ions In A High-Throughput Structural Genomics Environment.
J Struct Funct Genomics V. 12 83 2011
PubMed-ID: 21359836  |  Reference-DOI: 10.1007/S10969-011-9101-7

(-) Compounds

Molecule 1 - ACETYLPOLYAMINE AMINOHYDROLASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: APHA, BURPS1710B_1309
    Organism Scientific: BURKHOLDERIA PSEUDOMALLEI 1710B
    Organism Taxid: 320372
    Strain: 1710B

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 49)

Asymmetric Unit (4, 49)
No.NameCountTypeFull Name
1IOD35Ligand/IonIODIDE ION
2K4Ligand/IonPOTASSIUM ION
3SO46Ligand/IonSULFATE ION
4ZN4Ligand/IonZINC ION
Biological Unit 1 (2, 21)
No.NameCountTypeFull Name
1IOD18Ligand/IonIODIDE ION
2K-1Ligand/IonPOTASSIUM ION
3SO43Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 20)
No.NameCountTypeFull Name
1IOD17Ligand/IonIODIDE ION
2K-1Ligand/IonPOTASSIUM ION
3SO43Ligand/IonSULFATE ION
4ZN-1Ligand/IonZINC ION

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:192 , HIS A:194 , ASP A:281 , SO4 A:401BINDING SITE FOR RESIDUE ZN A 400
02AC2SOFTWAREHIS A:156 , HIS A:157 , GLY A:165 , ASP A:192 , HIS A:194 , ASP A:281 , TYR A:320 , ZN A:400BINDING SITE FOR RESIDUE SO4 A 401
03AC3SOFTWAREASP A:190 , ASP A:192 , HIS A:194 , SER A:213 , ILE A:214BINDING SITE FOR RESIDUE K A 402
04AC4SOFTWAREHIS A:13 , GLU A:120BINDING SITE FOR RESIDUE IOD A 343
05AC5SOFTWARESER A:19 , ARG A:20 , ASN B:91BINDING SITE FOR RESIDUE IOD A 345
06AC6SOFTWAREASN A:91BINDING SITE FOR RESIDUE IOD A 346
07AC7SOFTWARESER A:19 , SER A:115BINDING SITE FOR RESIDUE IOD A 347
08AC8SOFTWAREGLN A:106 , HOH A:453BINDING SITE FOR RESIDUE IOD A 348
09AC9SOFTWAREHOH A:480BINDING SITE FOR RESIDUE IOD A 349
10BC1SOFTWAREASP C:192 , HIS C:194 , ASP C:281 , SO4 C:401BINDING SITE FOR RESIDUE ZN C 400
11BC2SOFTWAREHIS C:156 , HIS C:157 , GLY C:165 , ASP C:192 , HIS C:194 , ASP C:281 , GLY C:318 , TYR C:320 , ZN C:400BINDING SITE FOR RESIDUE SO4 C 401
12BC3SOFTWAREASP C:190 , ASP C:192 , HIS C:194 , SER C:213 , ILE C:214BINDING SITE FOR RESIDUE K C 402
13BC4SOFTWAREPRO C:247BINDING SITE FOR RESIDUE IOD C 342
14BC5SOFTWAREHIS C:13 , GLU C:120 , HIS C:121BINDING SITE FOR RESIDUE IOD C 343
15BC6SOFTWARETHR C:72BINDING SITE FOR RESIDUE IOD C 344
16BC7SOFTWARESER C:19 , ASN D:91BINDING SITE FOR RESIDUE IOD C 345
17BC8SOFTWARESER C:19 , SER C:115BINDING SITE FOR RESIDUE IOD C 348
18BC9SOFTWAREASP B:192 , HIS B:194 , ASP B:281 , SO4 B:401BINDING SITE FOR RESIDUE ZN B 400
19CC1SOFTWAREHIS B:156 , HIS B:157 , GLY B:165 , ASP B:192 , HIS B:194 , ASP B:281 , TYR B:320 , ZN B:400BINDING SITE FOR RESIDUE SO4 B 401
20CC2SOFTWAREASP B:190 , ASP B:192 , HIS B:194 , SER B:213 , ILE B:214BINDING SITE FOR RESIDUE K B 402
21CC3SOFTWAREARG B:22 , ARG B:24 , MET B:25 , HOH B:483 , ARG D:48BINDING SITE FOR RESIDUE SO4 B 403
22CC4SOFTWAREHIS B:13 , GLU B:120BINDING SITE FOR RESIDUE IOD B 344
23CC5SOFTWARESER B:115BINDING SITE FOR RESIDUE IOD B 347
24CC6SOFTWAREGLN B:200 , HOH B:424BINDING SITE FOR RESIDUE IOD B 348
25CC7SOFTWAREHOH B:420BINDING SITE FOR RESIDUE IOD B 350
26CC8SOFTWAREASP D:192 , HIS D:194 , ASP D:281 , SO4 D:401BINDING SITE FOR RESIDUE ZN D 400
27CC9SOFTWAREHIS D:156 , HIS D:157 , GLY D:165 , ASP D:192 , HIS D:194 , ASP D:281 , TYR D:320 , ZN D:400BINDING SITE FOR RESIDUE SO4 D 401
28DC1SOFTWAREASP D:190 , ASP D:192 , HIS D:194 , SER D:213 , ILE D:214BINDING SITE FOR RESIDUE K D 402
29DC2SOFTWAREARG D:24 , MET D:25BINDING SITE FOR RESIDUE SO4 D 403
30DC3SOFTWARESER D:19BINDING SITE FOR RESIDUE IOD D 343
31DC4SOFTWAREHIS D:13BINDING SITE FOR RESIDUE IOD D 346
32DC5SOFTWAREHOH D:360BINDING SITE FOR RESIDUE IOD D 347
33DC6SOFTWARESER D:19 , SER D:115BINDING SITE FOR RESIDUE IOD D 349
34DC7SOFTWAREARG D:141 , LEU D:179 , ARG D:182 , HIS D:183BINDING SITE FOR RESIDUE IOD D 350

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MEN)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Glu A:96 -Pro A:97
2Arg A:152 -Pro A:153
3Tyr A:222 -Pro A:223
4Glu B:96 -Pro B:97
5Arg B:152 -Pro B:153
6Tyr B:222 -Pro B:223
7Glu C:96 -Pro C:97
8Arg C:152 -Pro C:153
9Tyr C:222 -Pro C:223
10Glu D:96 -Pro D:97
11Arg D:152 -Pro D:153
12Tyr D:222 -Pro D:223

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MEN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MEN)

(-) Exons   (0, 0)

(no "Exon" information available for 3MEN)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:339
 aligned with APAHL_BURP1 | Q3JUN4 from UniProtKB/Swiss-Prot  Length:341

    Alignment length:339
                             1                                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
          APAHL_BURP1     - -MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGA 338
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhh....eee..eee.....hhhhhhhhhhhhhh...ee......hhhhhh..hhhhhhhhhhhhhhhhh.hhhhh................hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh...eeee....................hhhhhhhhhhh.....eeeee.....hhhhhhhh.....eeeeeeee.................hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3men A   0 SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGA 338
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         


Chain B from PDB  Type:PROTEIN  Length:342
 aligned with APAHL_BURP1 | Q3JUN4 from UniProtKB/Swiss-Prot  Length:341

    Alignment length:342
                             1                                                                                                                                                                                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339  
          APAHL_BURP1     - -MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGALRG 341
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eee.hhhhhhh....eee..eee.....hhhhhhhhhhhhhh...ee......hhhhhh..hhhhhhhhhhhhhhhhh.hhhhh................hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh...eeee....................hhhhhhhhhhh.....eeeee.....hhhhhhhhh....eeeeeeee.................hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3men B   0 SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGALRG 341
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339  


Chain C from PDB  Type:PROTEIN  Length:337
 aligned with APAHL_BURP1 | Q3JUN4 from UniProtKB/Swiss-Prot  Length:341

    Alignment length:337
                             1                                                                                                                                                                                                                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       
          APAHL_BURP1     - -MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGF 336
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhh....eee..eee.....hhhhhhhhhhhhhh...ee......hhhhhh..hhhhhhhhhhhhhhhhh.hhhhh................hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhh..eeee....................hhhhhhhhhhh.....eeeee.....hhhhhhhh.....eeeeeeee.................hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3men C   0 SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGF 336
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       


Chain D from PDB  Type:PROTEIN  Length:339
 aligned with APAHL_BURP1 | Q3JUN4 from UniProtKB/Swiss-Prot  Length:341

    Alignment length:339
                             1                                                                                                                                                                                                                                                                                                                                                 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329         
          APAHL_BURP1     - -MLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGA 338
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhh....eee..eee....hhhhhhhhhhhhhh....ee......hhhhhh..hhhhhhhhhhhhhhhhh.hhhhh................hhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh...eeee....................hhhhhhhhhhh.....eeeee.....hhhhhhhhh....eeeeeeee.................hhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhh....eeeee.......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3men D   0 SMLTYFHPDQSLHHPRTYFSRGRMRMPQEVPERAARLVAAAFAMGFPVREPDDFGIAPIAAVHDTHYLRFLETVHREWKAMPEDWGDEAMSNIFVREPNALRGVLAQAARHLADGSCPVGEHTWRAAYWSAQSALAAAAAVRDGAPAAYALCRPPGHHARVDAAGGFCYLNNAAIAAQALRARHARVAVLDTDMHHGQGIQEIFYARRDVLYVSIHGDPTNFYPAVAGFDDERGAGEGLGYNVNLPMPHGSSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQSQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLEANARSFFGGFGA 338
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MEN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MEN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3MEN)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (APAHL_BURP1 | Q3JUN4)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    IOD  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    K  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
    BC7  [ RasMol ]  +environment [ RasMol ]
    BC8  [ RasMol ]  +environment [ RasMol ]
    BC9  [ RasMol ]  +environment [ RasMol ]
    CC1  [ RasMol ]  +environment [ RasMol ]
    CC2  [ RasMol ]  +environment [ RasMol ]
    CC3  [ RasMol ]  +environment [ RasMol ]
    CC4  [ RasMol ]  +environment [ RasMol ]
    CC5  [ RasMol ]  +environment [ RasMol ]
    CC6  [ RasMol ]  +environment [ RasMol ]
    CC7  [ RasMol ]  +environment [ RasMol ]
    CC8  [ RasMol ]  +environment [ RasMol ]
    CC9  [ RasMol ]  +environment [ RasMol ]
    DC1  [ RasMol ]  +environment [ RasMol ]
    DC2  [ RasMol ]  +environment [ RasMol ]
    DC3  [ RasMol ]  +environment [ RasMol ]
    DC4  [ RasMol ]  +environment [ RasMol ]
    DC5  [ RasMol ]  +environment [ RasMol ]
    DC6  [ RasMol ]  +environment [ RasMol ]
    DC7  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Arg A:152 - Pro A:153   [ RasMol ]  
    Arg B:152 - Pro B:153   [ RasMol ]  
    Arg C:152 - Pro C:153   [ RasMol ]  
    Arg D:152 - Pro D:153   [ RasMol ]  
    Glu A:96 - Pro A:97   [ RasMol ]  
    Glu B:96 - Pro B:97   [ RasMol ]  
    Glu C:96 - Pro C:97   [ RasMol ]  
    Glu D:96 - Pro D:97   [ RasMol ]  
    Tyr A:222 - Pro A:223   [ RasMol ]  
    Tyr B:222 - Pro B:223   [ RasMol ]  
    Tyr C:222 - Pro C:223   [ RasMol ]  
    Tyr D:222 - Pro D:223   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3men
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  APAHL_BURP1 | Q3JUN4
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  APAHL_BURP1 | Q3JUN4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3MEN)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3MEN)