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(-) Description

Title :  THE STRUCTURE OF N-FORMIMINO-L-GLUTAMATE IMINOHYDROLASE FROM PSEUDOMONAS AERUGINOSA COMPLEXED WITH N-GUANIDINO-L-GLUTAMATE
 
Authors :  A. A. Fedorov, E. V. Fedorov, R. Marti-Arbona, F. M. Raushel, S. C. Almo
Date :  30 Mar 10  (Deposition) - 09 Mar 11  (Release) - 11 Feb 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Amonohydralase Family, N-Formimino-L-Glutamate Iminohydrolase, N- Guanidino-L-Glutamate, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Fedorov, R. Marti-Arbona, V. V. Nemmara, D. Hitchcock, E. V. Fedorov, S. C. Almo, F. M. Raushel
Structure Of N-Formimino-L-Glutamate Iminohydrolase From Pseudomonas Aeruginosa.
Biochemistry V. 54 890 2015
PubMed-ID: 25559274  |  Reference-DOI: 10.1021/BI501299Y

(-) Compounds

Molecule 1 - N-FORMIMINO-L-GLUTAMATE IMINOHYDROLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PA5106
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NGQ1Ligand/IonN-CARBAMIMIDOYL-L-GLUTAMIC ACID
3ZN1Ligand/IonZINC ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2NGQ1Ligand/IonN-CARBAMIMIDOYL-L-GLUTAMIC ACID
3ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1GOL4Ligand/IonGLYCEROL
2NGQ2Ligand/IonN-CARBAMIMIDOYL-L-GLUTAMIC ACID
3ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:56 , HIS A:58 , HIS A:232 , ASP A:320 , HOH A:495BINDING SITE FOR RESIDUE ZN A 454
2AC2SOFTWAREHIS A:58 , GLN A:61 , PHE A:78 , TRP A:81 , ARG A:82 , TYR A:121 , HIS A:206 , ARG A:209 , GLU A:235 , LEU A:298 , HOH A:495 , HOH A:499 , HOH A:514 , HOH A:562BINDING SITE FOR RESIDUE NGQ A 455
3AC3SOFTWARELEU A:126 , ASP A:127 , GLN A:446 , GLU A:450 , HOH A:575 , HOH A:595 , HOH A:632 , HOH A:753BINDING SITE FOR RESIDUE GOL A 456
4AC4SOFTWAREGLU A:98 , ARG A:129 , ALA A:147 , HOH A:573 , HOH A:740BINDING SITE FOR RESIDUE GOL A 457

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MDU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3MDU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MDU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MDU)

(-) Exons   (0, 0)

(no "Exon" information available for 3MDU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:450
 aligned with Q9HU77_PSEAE | Q9HU77 from UniProtKB/TrEMBL  Length:453

    Alignment length:450
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451
         Q9HU77_PSEAE     2 SAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAGHDDLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGEERSARAFVQVLGEL 451
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ---------------------------------------------Amidohydro_1-3mduA01 A:47-391                                                                                                                                                                                                                                                                                                                            ------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeee..eeeeeeeeee.....eeeee........ee....eee.eeeeeehhhhhhhh...........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.eeeeeeee..............hhhhhhhhhhhhhhh.eeeeee.............hhhhhhhh.hhhhhhhhhhhhhhhhhhh..ee.eeeee....hhhhhhhhhh.......eeeee..hhhhhhhhhhhhh.hhhhhhhhhh.....eeeee....hhhhhhhhhhhh.eeeehhhhhhhh.....hhhhhhhh..eeee........hhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhh.............eeee...hhhhhh.hhhhhhhhhhhhhhhh.eeeeee..eeee......hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3mdu A   2 SAIFAERALLPEGWARNVRFEISADGVLAEIRPDANADGAERLGGAVLPGMPNLHSHAFQRAMAGLAEVAGNPNDSFWTWRELMYRMVARLSPEQIEVIACQLYIEMLKAGYTAVAEFHYVHHDLDGRSYADPAELSLRISRAASAAGIGLTLLPVLYSHAGFGGQPASEGQRRFINGSEAYLELLQRLRAPLEAAGHSLGLCFHSLRAVTPQQIATVLAAGHDDLPVHIHIAEQQKEVDDCQAWSGRRPLQWLYENVAVDQRWCLVHATHADPAEVAAMARSGAVAGLCLSTEANLGDGIFPATDFLAQGGRLGIGSDSHVSLSVVEELRWLEYGQRLRDRKRNRLYRDDQPMIGRTLYDAALAGGAQALGQPIGSLAVGRRADLLVLDGNDPYLASAEGDALLNRWLFAGGDRQVRDVMVAGRWVVRDGRHAGEERSARAFVQVLGEL 451
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MDU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MDU)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Amidohydrolase (126)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q9HU77_PSEAE | Q9HU77)
molecular function
    GO:0019239    deaminase activity    Catalysis of the removal of an amino group from a substrate, producing ammonia (NH3).
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016810    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds    Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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  Q9HU77_PSEAE | Q9HU77
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9HU77_PSEAE | Q9HU77: 3mdw 4rdv 4rdw 4rzb

(-) Related Entries Specified in the PDB File

3mdw THE SAME PROTEIN COMPLEXED WITH ANOTHER LIGAND