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(-) Description

Title :  CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (BT_2365) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.49 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Mar 10  (Deposition) - 19 May 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd Superfamily Protein (Bt_2365) Fro Bacteroides Thetaiotaomicron Vpi-5482 At 1. 49 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD SUPERFAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BT_2365
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON
    Organism Taxid: 226186
    Strain: VPI-5482

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2GOL5Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE
4ZN6Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREACT A:7 , GLU A:126 , GLU A:197 , HOH A:1234 , HOH A:1235BINDING SITE FOR RESIDUE ZN A 1
02AC2SOFTWAREGOL A:13 , GLU A:262 , GLU A:395BINDING SITE FOR RESIDUE ZN A 2
03AC3SOFTWAREGLU A:335 , GLU A:339 , HIS A:350 , GLU A:471BINDING SITE FOR RESIDUE ZN A 3
04AC4SOFTWAREACT A:8 , ASP A:403 , HOH A:620 , HOH A:621 , HOH A:623BINDING SITE FOR RESIDUE ZN A 4
05AC5SOFTWAREASP A:411 , SER A:413 , HOH A:715 , HOH A:1055 , HOH A:1206 , HOH A:1236BINDING SITE FOR RESIDUE ZN A 5
06AC6SOFTWAREASP A:182 , HIS A:185 , HOH A:1233BINDING SITE FOR RESIDUE ZN A 6
07AC7SOFTWAREZN A:1 , GLU A:197 , GLN A:198 , SER A:201 , ASN A:205 , HOH A:592 , HOH A:866 , HOH A:1224BINDING SITE FOR RESIDUE ACT A 7
08AC8SOFTWAREZN A:4 , ASP A:403 , HOH A:623 , HOH A:764 , HOH A:1142 , HOH A:1183BINDING SITE FOR RESIDUE ACT A 8
09AC9SOFTWAREPHE A:272 , HOH A:641 , HOH A:1092BINDING SITE FOR RESIDUE ACT A 9
10BC1SOFTWARETRP A:108 , TYR A:112 , ARG A:116 , PRO A:175 , GLU A:177 , GLU A:485 , HOH A:696 , HOH A:986BINDING SITE FOR RESIDUE GOL A 10
11BC2SOFTWAREASP A:84 , GLY A:85 , LYS A:86 , ALA A:98 , SER A:99 , GLN A:483 , HOH A:557 , HOH A:875 , HOH A:982 , HOH A:1017BINDING SITE FOR RESIDUE GOL A 11
12BC3SOFTWARELYS A:82 , ARG A:87 , ASP A:307 , TRP A:308 , HOH A:698 , HOH A:926 , HOH A:1095BINDING SITE FOR RESIDUE GOL A 12
13BC4SOFTWAREZN A:2 , TYR A:261 , GLU A:262 , GLU A:395 , SER A:406 , THR A:409 , THR A:410 , HOH A:894BINDING SITE FOR RESIDUE GOL A 13
14BC5SOFTWAREGLU A:351 , THR A:473BINDING SITE FOR RESIDUE GOL A 14

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3MCX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Glu A:286 -Pro A:287

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3MCX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3MCX)

(-) Exons   (0, 0)

(no "Exon" information available for 3MCX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:459
 aligned with Q8A577_BACTN | Q8A577 from UniProtKB/TrEMBL  Length:497

    Alignment length:459
                                    48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488         
         Q8A577_BACTN    39 VTLDDAQIALNGIYRLASGHSYYGDNYWYYGDCRAADVQARITKGDGKRVSPYYEYNVLASDNLNIVLPWNTVYKVIRQTNNLIQKIESGSIQSSDTKELNRIKSEALVMRGLSLFNLTRLFGMPYTNDKGASLGVPIETSPSDPTHKPSRSTVAQCYEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKNNGGRYQLYSYEEYPNVWGQDFQSESLFELYITLSEPSGGTGGEGAPMVYANEATVDWNNLILSEDFLNLLNEDPKDVRHCLTKESVIENNTGLPAAAMHEKVYLAKFPGKTGDDPKTNNICIIRLSEVYLNAAEAGLKKGTDIEEAQGYLNDIISRRTTDTSQQVSTETFTLDRILKERRKELVGEGEVFYDYLRNGLAIERKGSWHLETLKASNAQKIEATDLRIALPIPQSEIDANPNIQQNPR 497
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains SusD-like_3-3mcxA02 A:39-233                                                                                                                                                                       ----------------------------------------SusD-3mcxA01 A:274-497                                                                                                                                                                                                           Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhh.....hhhhhhhhhh...ee..........hhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.......................hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh..........hhhhh........eeeee..............hhhhhh...........eehhhhhhhhh....hhhhh.ee..........hhhhh....ee.........hhhhh.eeeeehhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh....hhhhh......hhhhhhhhhhhhhh...hhhhhhhhh...ee.......hhhhhh...ee...hhhhh...hhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3mcx A  39 VTLDDAQIALNGIYRLASGHSYYGDNYWYYGDCRAADVQARITKGDGKRVSPYYEYNVLASDNLNIVLPWNTVYKVIRQTNNLIQKIESGSIQSSDTKELNRIKSEALVmRGLSLFNLTRLFGmPYTNDKGASLGVPIETSPSDPTHKPSRSTVAQCYEQVVSDmSNALSGLRQETSNGYINYWAAQALLSRVYLNmGEYQKAYDAATDVIKNNGGRYQLYSYEEYPNVWGQDFQSESLFELYITLSEPSGGTGGEGAPmVYANEATVDWNNLILSEDFLNLLNEDPKDVRHCLTKESVIENNTGLPAAAmHEKVYLAKFPGKTGDDPKTNNICIIRLSEVYLNAAEAGLKKGTDIEEAQGYLNDIISRRTTDTSQQVSTETFTLDRILKERRKELVGEGEVFYDYLRNGLAIERKGSWHLETLKASNAQKIEATDLRIALPIPQSEIDANPNIQQNPR 497
                                    48        58        68        78        88        98       108       118       128       138       148       158   |   168       178       188       198    |  208       218       228      |238       248       258       268       278       288       298       308       318       328       338       348|      358       368       378       388       398       408       418       428       438       448       458       468       478       488         
                                                                                                                                       148-MSE       162-MSE                                  203-MSE                         235-MSE                                                        298-MSE                                            349-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3MCX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3MCX)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8A577_BACTN | Q8A577)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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