3M7W - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TYPE I 3-DEHYDROQUINATE DEHYDRATASE (AROD) FROM SALMONELLA TYPHIMURIUM LT2 IN COVALENT COMPLEX WITH DEHYDROQUINATE

Authors :   G. Minasov, S. H. Light, L. Shuvalova, L. Papazisi, W. F. Anderson, Cent Structural Genomics Of Infectious Diseases (Csgid)

Date :   17 Mar 10 (Deposition) - 07 Apr 10 (Release) - 04 May 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.95

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)
Biol. Unit 3: E,F  (1x)

Keywords :   Type I 3-Dehydroquinase, Dhqase_i, Dehydroquinate, Idp90922, Amino- Acid Biosynthesis, Aromatic Amino Acid Biosynthesis, Lyase, Schiff Base, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. H. Light, G. Minasov, L. Shuvalova, M. E. Duban, M. Caffrey, W. F. Anderson, A. Lavie
Insights Into The Mechanism Of Type I Dehydroquinate Dehydratases From Structures Of Reaction Intermediates.
J. Biol. Chem. V. 286 3531 2011
PubMed-ID: 21087925 | Reference-DOI: 10.1074/JBC.M110.192831

Molecule 1 - 3-DEHYDROQUINATE DEHYDRATASE
	Chains	:	A, B, C, D, E, F
	EC Number	:	4.2.1.10
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	AROD, STM1358
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM
	Organism Taxid	:	99287
	Strain	:	LT2
	Synonym	:	3-DEHYDROQUINASE, TYPE I DHQASE

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C
Biological Unit 3 (1x)	:					E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 20)

No.	Name	Count	Type	Full Name
1	DQA	6	Ligand/Ion	1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
2	GOL	14	Ligand/Ion	GLYCEROL

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	DQA	2	Ligand/Ion	1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
2	GOL	3	Ligand/Ion	GLYCEROL

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	DQA	2	Ligand/Ion	1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
2	GOL	6	Ligand/Ion	GLYCEROL

Biological Unit 3 (2, 7)

No.	Name	Count	Type	Full Name
1	DQA	2	Ligand/Ion	1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID
2	GOL	5	Ligand/Ion	GLYCEROL

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:21 , GLU A:46 , ARG A:48 , ARG A:82 , HIS A:143 , LYS A:170 , MET A:203 , MET A:205 , ARG A:213 , PHE A:225 , SER A:232 , ALA A:233 , GLN A:236	BINDING SITE FOR RESIDUE DQA A 253
02	AC2	SOFTWARE	ALA A:15 , ARG A:243 , THR A:247 , HIS A:250 , HOH A:1011	BINDING SITE FOR RESIDUE GOL A 254
03	AC3	SOFTWARE	SER B:21 , GLU B:46 , ARG B:48 , ARG B:82 , HIS B:143 , LYS B:170 , ARG B:213 , PHE B:225 , SER B:232 , ALA B:233 , GLN B:236	BINDING SITE FOR RESIDUE DQA B 253
04	AC4	SOFTWARE	ALA B:15 , ARG B:243 , THR B:247	BINDING SITE FOR RESIDUE GOL B 254
05	AC5	SOFTWARE	GLY B:87 , PHE B:145 , HOH B:285 , HOH B:587 , HOH B:659 , GLY D:87 , PHE D:145 , PRO D:234	BINDING SITE FOR RESIDUE GOL B 255
06	AC6	SOFTWARE	SER C:21 , GLU C:46 , ARG C:48 , ARG C:82 , HIS C:143 , LYS C:170 , MET C:203 , ARG C:213 , PHE C:225 , SER C:232 , ALA C:233 , GLN C:236	BINDING SITE FOR RESIDUE DQA C 253
07	AC7	SOFTWARE	SER C:83 , LYS C:85 , LEU C:92 , TYR C:97 , HOH C:286 , HOH C:304 , HOH C:445 , HOH C:756	BINDING SITE FOR RESIDUE GOL C 254
08	AC8	SOFTWARE	GLY C:87 , PHE C:145 , PRO C:234 , HOH C:444 , HOH C:544 , HOH C:588 , GLY F:87 , PHE F:145	BINDING SITE FOR RESIDUE GOL C 255
09	AC9	SOFTWARE	ALA C:15 , ARG C:243 , THR C:247	BINDING SITE FOR RESIDUE GOL C 256
10	BC1	SOFTWARE	GLU B:193 , THR C:177 , LYS C:178 , HOH C:259 , HOH C:598 , HOH C:1094 , THR F:93	BINDING SITE FOR RESIDUE GOL C 257
11	BC2	SOFTWARE	SER D:21 , GLU D:46 , ARG D:48 , ARG D:82 , HIS D:143 , LYS D:170 , MET D:205 , ARG D:213 , PHE D:225 , SER D:232 , ALA D:233 , GLN D:236	BINDING SITE FOR RESIDUE DQA D 253
12	BC3	SOFTWARE	SER D:83 , LYS D:85 , LEU D:92 , TYR D:97 , HOH D:282 , HOH D:304 , HOH D:357 , HOH D:901	BINDING SITE FOR RESIDUE GOL D 254
13	BC4	SOFTWARE	ARG D:69 , GLY D:108 , VAL D:110 , ASP D:111 , ASN D:135 , HOH D:574	BINDING SITE FOR RESIDUE GOL D 255
14	BC5	SOFTWARE	SER E:21 , GLU E:46 , ARG E:48 , ARG E:82 , HIS E:143 , LYS E:170 , ARG E:213 , PHE E:225 , SER E:232 , ALA E:233 , GLN E:236	BINDING SITE FOR RESIDUE DQA E 253
15	BC6	SOFTWARE	ASN D:135 , THR E:5 , HIS E:132 , ASN E:135 , ASP E:167 , HOH E:1063	BINDING SITE FOR RESIDUE GOL E 254
16	BC7	SOFTWARE	SER E:83 , LEU E:92 , TYR E:97 , HOH E:309 , HOH E:327 , HOH E:464	BINDING SITE FOR RESIDUE GOL E 255
17	BC8	SOFTWARE	GLU E:33 , LYS E:229 , LYS E:230 , ASP F:121 , ASP F:122 , HOH F:558 , HOH F:729	BINDING SITE FOR RESIDUE GOL E 256
18	BC9	SOFTWARE	SER F:21 , GLU F:46 , ARG F:48 , ARG F:82 , HIS F:143 , LYS F:170 , MET F:203 , ARG F:213 , PHE F:225 , SER F:232 , ALA F:233 , GLN F:236	BINDING SITE FOR RESIDUE DQA F 253
19	CC1	SOFTWARE	LYS F:147 , THR F:148 , GLN F:176 , ASP F:180 , HOH F:397 , HOH F:816	BINDING SITE FOR RESIDUE GOL F 254
20	CC2	SOFTWARE	ALA A:53 , GLU F:217 , HIS F:250 , HOH F:976	BINDING SITE FOR RESIDUE GOL F 255

(no "SS Bond" information available for 3M7W)

(no "Cis Peptide Bond" information available for 3M7W)

(no "SAP(SNP)/Variant" information available for 3M7W)

Asymmetric Unit (1, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEHYDROQUINASE_I	PS01028	Dehydroquinase class I active site.	AROD_SALTY	114-144	6	A:114-144 B:114-144 C:114-144 D:114-144 E:114-144 F:114-144

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEHYDROQUINASE_I	PS01028	Dehydroquinase class I active site.	AROD_SALTY	114-144	2	A:114-144 - - D:114-144 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEHYDROQUINASE_I	PS01028	Dehydroquinase class I active site.	AROD_SALTY	114-144	2	- B:114-144 C:114-144 - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DEHYDROQUINASE_I	PS01028	Dehydroquinase class I active site.	AROD_SALTY	114-144	2	- - - - E:114-144 F:114-144

(no "Exon" information available for 3M7W)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:251
 aligned with AROD_SALTY | P58687 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
           AROD_SALTY     2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
               SCOP domains d3m7wa_ A: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.....eeeeee...hhhhhhhhhhhhh.....eeeee.hhh....hhhhhhhhhhhhhhhh....eeee..hhhhh.....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhh..eeee...........hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------DEHYDROQUINASE_I  PDB: A:114-14------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7w A   2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain B from PDB  Type:PROTEIN  Length:251
 aligned with AROD_SALTY | P58687 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
           AROD_SALTY     2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
               SCOP domains d3m7wb_ B: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.....eeeeee...hhhhhhhhhhhhh.....eeeee.hhh....hhhhhhhhhhhhhhhh....eeee..hhhhh.....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhh...eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhh..eee............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------DEHYDROQUINASE_I  PDB: B:114-14------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7w B   2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain C from PDB  Type:PROTEIN  Length:251
 aligned with AROD_SALTY | P58687 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
           AROD_SALTY     2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
               SCOP domains d3m7wc_ C: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.....eeeeee...hhhhhhhhhhhhh.....eeeee.hhh....hhhhhhhhhhhhhhhh....eeee..hhhhh.....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhh..eee............hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------DEHYDROQUINASE_I  PDB: C:114-14------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7w C   2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain D from PDB  Type:PROTEIN  Length:252
 aligned with AROD_SALTY | P58687 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  
           AROD_SALTY     1 MKTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
               SCOP domains d3m7wd_ D: automated matches                                                                                                                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee..eee.....eeeeee...hhhhhhhhhhhhh.....eeeee.hhh....hhhhhhhhhhhhhhhh....eeee..hhhhh.....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhh..eee............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------DEHYDROQUINASE_I  PDB: D:114-14------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m7w D   1 MKTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250

Chain E from PDB  Type:PROTEIN  Length:251
 aligned with AROD_SALTY | P58687 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
           AROD_SALTY     2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
               SCOP domains d3m7we_ E: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eee.....eeeeee...hhhhhhhhhhhhh.....eeeee.hhh....hhhhhhhhhhhhhh......eeee..hhhhh.....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh.....eeeehhhhhhhhhhhhhhhh..eee............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------DEHYDROQUINASE_I  PDB: E:114-14------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7w E   2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain F from PDB  Type:PROTEIN  Length:251
 aligned with AROD_SALTY | P58687 from UniProtKB/Swiss-Prot  Length:252

    Alignment length:251
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251 
           AROD_SALTY     2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
               SCOP domains d3m7wf_ F: automated matches                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------DHquinase_I-3m7wF01 F:19-247                                                                                                                                                                                                         ----- Pfam domains (1)
           Pfam domains (2) -----------------DHquinase_I-3m7wF02 F:19-247                                                                                                                                                                                                         ----- Pfam domains (2)
           Pfam domains (3) -----------------DHquinase_I-3m7wF03 F:19-247                                                                                                                                                                                                         ----- Pfam domains (3)
           Pfam domains (4) -----------------DHquinase_I-3m7wF04 F:19-247                                                                                                                                                                                                         ----- Pfam domains (4)
           Pfam domains (5) -----------------DHquinase_I-3m7wF05 F:19-247                                                                                                                                                                                                         ----- Pfam domains (5)
           Pfam domains (6) -----------------DHquinase_I-3m7wF06 F:19-247                                                                                                                                                                                                         ----- Pfam domains (6)
         Sec.struct. author ..eee..eee.....eeeeee...hhhhhhhhhhhhh.....eeeee.hhh....hhhhhhhhhhhhhhhh....eeee..hhhhh.....hhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhh..eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhhhhhhh..eee............hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------DEHYDROQUINASE_I  PDB: F:114-14------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m7w F   2 KTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQA 252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: automated matches (54)

Salmonella enterica [TaxId: 99287] (4)

1a	d3m7wa_	A:
1b	d3m7wb_	B:
1c	d3m7wc_	C:
1d	d3m7wd_	D:
1e	d3m7we_	E:
1f	d3m7wf_	F:

(no "CATH Domain" information available for 3M7W)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: DHquinase_I (17)

Salmonella typhimurium (7)

1a	DHquinase_I-3m7wF01	F:19-247
1b	DHquinase_I-3m7wF02	F:19-247
1c	DHquinase_I-3m7wF03	F:19-247
1d	DHquinase_I-3m7wF04	F:19-247
1e	DHquinase_I-3m7wF05	F:19-247
1f	DHquinase_I-3m7wF06	F:19-247

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (AROD_SALTY | P58687)

molecular function
	GO:0003855	3-dehydroquinate dehydratase activity	Catalysis of the reaction: 3-dehydroquinate = 3-dehydroshikimate + H(2)O.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0046279	3,4-dihydroxybenzoate biosynthetic process	The chemical reactions and pathways resulting in the formation of 3,4-dihydroxybenzoate.
	GO:0009073	aromatic amino acid family biosynthetic process	The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009423	chorismate biosynthetic process	The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.

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	3m7w
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	4.2.1.10
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	AROD_SALTY \| P58687	:	3l2i 3lb0 3nnt 3o1n 3oex 3s42 4gfs 4guf 4gug 4guh 4gui 4guj 4iuo

3l2i	CRYSTAL STRUCTURE OF THE 3-DEHYDROQUINATE DEHYDRATASE (AROD) FROM SALMONELLA TYPHIMURIUM LT2.
3lb0	CRYSTAL STRUCTURE OF THE 3-DEHYDROQUINATE DEHYDRATASE (AROD) FROM SALMONELLA TYPHIMURIUM LT2 WITH CITRATE BOUND TO THE ACTIVE SITE. RELATED ID: IDP90922 RELATED DB: TARGETDB

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (2, 20)

Sites (20, 20)

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