3M3G - JenaLib

Title :   CRYSTAL STRUCTURE OF SM1, AN ELICITOR OF PLANT DEFENCE RESPONSES FROM TRICHODERMA VIRENS.

Authors :   I. V. Krieger, W. A. Vargas, C. M. Kenerley, J. C. Sacchettini

Date :   09 Mar 10 (Deposition) - 09 Feb 11 (Release) - 09 Feb 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.39

Chains :   Asym./Biol. Unit : A

Keywords :   Fungal, Plant Defense, Fungus, Polysaccharide-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. V. Krieger, W. A. Vargas, C. M. Kenerley, J. C. Sacchettini
Crystal Structure Of Sm1, An Elicitor Of Plant Defence Responses From Trichoderma Virens.
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 16)

Sites (16, 16)

Asymmetric Unit (16, 16)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:89 , HIS A:98 , ZN A:139	BINDING SITE FOR RESIDUE BR A 1
02	AC2	SOFTWARE	EDO A:6 , HIS A:89 , ZN A:139	BINDING SITE FOR RESIDUE BR A 2
03	AC3	SOFTWARE	BR A:1 , BR A:2 , HIS A:89 , HIS A:98	BINDING SITE FOR RESIDUE ZN A 139
04	AC4	SOFTWARE	EDO A:8 , ASP A:19 , THR A:20 , GLY A:102	BINDING SITE FOR RESIDUE EDO A 140
05	AC5	SOFTWARE	EDO A:3 , EDO A:4 , SER A:31 , HIS A:89 , THR A:90 , ILE A:91 , ALA A:112	BINDING SITE FOR RESIDUE EDO A 141
06	AC6	SOFTWARE	EDO A:4 , ASP A:28 , GLY A:30 , SER A:101 , EDO A:141 , HOH A:178	BINDING SITE FOR RESIDUE EDO A 3
07	AC7	SOFTWARE	EDO A:3 , GLY A:88 , HIS A:89 , THR A:90 , ALA A:99 , ALA A:100 , SER A:101 , ASN A:104 , EDO A:141	BINDING SITE FOR RESIDUE EDO A 4
08	AC8	SOFTWARE	ASN A:111 , GLY A:116 , ALA A:118 , VAL A:119 , GLN A:120	BINDING SITE FOR RESIDUE EDO A 5
09	AC9	SOFTWARE	BR A:2 , EDO A:11 , PRO A:43 , SER A:53 , THR A:54 , GLN A:57 , ALA A:71 , HOH A:175 , HOH A:196	BINDING SITE FOR RESIDUE EDO A 6
10	BC1	SOFTWARE	ASP A:24 , TYR A:27 , TYR A:86 , SER A:87 , GLY A:88 , ASN A:104	BINDING SITE FOR RESIDUE EDO A 7
11	BC2	SOFTWARE	GLY A:56 , PRO A:59 , PHE A:61 , ALA A:68 , SER A:101 , GLY A:102 , EDO A:140	BINDING SITE FOR RESIDUE EDO A 8
12	BC3	SOFTWARE	ASP A:41 , THR A:48 , ALA A:71 , GLY A:72 , TRP A:73 , HOH A:187 , HOH A:189 , HOH A:196	BINDING SITE FOR RESIDUE EDO A 9
13	BC4	SOFTWARE	EDO A:11 , ASP A:41 , HIS A:51	BINDING SITE FOR RESIDUE EDO A 10
14	BC5	SOFTWARE	EDO A:6 , EDO A:10 , ASP A:41 , GLY A:42 , HIS A:51 , SER A:53 , GLN A:57 , ALA A:71 , HOH A:187 , HOH A:196	BINDING SITE FOR RESIDUE EDO A 11
15	BC6	SOFTWARE	TYR A:86 , LEU A:121 , SER A:125	BINDING SITE FOR RESIDUE EDO A 12
16	BC7	SOFTWARE	ASP A:19 , ALA A:68 , ALA A:69 , TRP A:82 , PHE A:103 , HOH A:193	BINDING SITE FOR RESIDUE EDO A 13

SS Bonds (2, 2)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:120
 aligned with Q0R411_HYPVI | Q0R411 from UniProtKB/TrEMBL  Length:138

    Alignment length:120
                                    28        38        48        58        68        78        88        98       108       118       128       138
         Q0R411_HYPVI    19 DTVSYDTGYDNGSRSLNDVSCSDGPNGLETRYHWSTQGQIPRFPYIGGAAAVAGWNSASCGTCWKLQYSGHTIYVLAVDHAASGFNIALDAMNALTGGQAVQLGRVSATATQVPVKNCGL 138
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains Cerato-platanin-3m3gA01 A:19-138                                                                                         Pfam domains
         Sec.struct. author .eeee.hhhhh...hhhhh.......hhhhhhh..hhhhh.....eeee.............eeeeee..eeeeeeeeee....eeehhhhhhhhhh.hhhhhheee.eeeeehhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3m3g A  19 DTVSYDTGYDNGSRSLNDVSCSDGPNGLETRYHWSTQGQIPRFPYIGGAAAVAGWNSASCGTCWKLQYSGHTIYVLAVDHAASGFNIALDAMNALTGGQAVQLGRVSATATQVPVKNCGL 138
                                    28        38        48        58        68        78        88        98       108       118       128       138

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (0, 0)

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	Sites
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	Cis Peptide Bonds
		Phe A:61 - Pro A:62	[ RasMol ]

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