3M0N - JenaLib

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Title :   PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS), E37A CATALYTIC RESIDUE MUTANT

Authors :   E. T. Larson, E. A. Merritt, Medical Structural Genomics Of Pathogenic Protozoa (Msgpp)

Date :   03 Mar 10 (Deposition) - 07 Apr 10 (Release) - 07 Apr 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A
Biol. Unit 1: A  (6x)

Keywords :   Pts, Ptp Synthase, Ptps, Metal-Binding, Tetrahydrobiopterin Biosynthesis, Folate Biosynthesis, Structural Genomics, Medical Structural Genomics Of Pathogenic Protozoa, Msgpp, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. T. Larson, J. Bosch, J. E. Kim, A. Kelley, L. Castaneda, A. Napuli, N. Mueller, C. L. M. J. Verlinde, W. C. Van Voorhis, F. S. Buckner, E. Fan, W. G. J. Hol, E. A. Merritt
Structural Analysis Of The Dual-Functional 6-Pyruvoyltetrahydropterin Synthase From Malaria Parasites.
To Be Published
PubMed: search

Molecule 1 - PUTATIVE 6-PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE
	Chains	:	A
	EC Number	:	4.2.3.12
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	BG1861
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PVX_114505
	Mutation	:	YES
	Organism Scientific	:	PLASMODIUM VIVAX
	Organism Taxid	:	5855

		1
Asymmetric Unit	:	A
Biological Unit 1 (6x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 2)

No.	Name	Count	Type	Full Name
1	PE0	1	Ligand/Ion	PTERINE
2	ZN	1	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 6)

No.	Name	Count	Type	Full Name
1	PE0	6	Ligand/Ion	PTERINE
2	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:28 , HIS A:40 , HIS A:42 , GLU A:160 , HOH A:260	BINDING SITE FOR RESIDUE ZN A 201
2	AC2	SOFTWARE	TYR A:59 , ILE A:61 , ASP A:62 , PHE A:63 , SER A:125 , THR A:126 , GLU A:127 , GLU A:160 , HOH A:260	BINDING SITE FOR RESIDUE PE0 A 202

(no "SS Bond" information available for 3M0N)

(no "Cis Peptide Bond" information available for 3M0N)

(no "SAP(SNP)/Variant" information available for 3M0N)

(no "PROSITE Motif" information available for 3M0N)

(no "Exon" information available for 3M0N)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:163
 aligned with A5K2B2_PLAVS | A5K2B2 from UniProtKB/TrEMBL  Length:172

    Alignment length:163
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169   
         A5K2B2_PLAVS    10 DQIAELLVESPLFSFNCAHFIAFKGFRETLHGHNYNVSLRLRGNIQGDGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHRNI 172
               SCOP domains d3m0na_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------PTPS-3m0nA01 A:18-171                                                                                                                                     - Pfam domains
         Sec.struct. author ..eeeeee.....eeeeee..ee..ee...eeeeeeeeeeeeee........hhhhhhhhhhhhhhhhh..eeee.....eeeeee..eeeeee....eeeee...eeee.....hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3m0n A  10 DQIAELLVESPLFSFNCAHFIAFKGFRATLHGHNYNVSLRLRGNIQGDGYVIDFSILKEKVRKVCKQLDHHFILPMYSDVLNIQEVNDNFKITCEDNSEYSFPKRDCVQIPIKHSSTEEIGLYILNQLIEEIDLPFLKTRSVNYMEVTVSESPSQKATVHRNI 172
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: T-fold (116)

Superfamily: Tetrahydrobiopterin biosynthesis enzymes-like (113)

Family: 6-pyruvoyl tetrahydropterin synthase (9)

Protein domain: automated matches (3)

Plasmodium vivax [TaxId: 5855] (3)

d3m0na_

(no "CATH Domain" information available for 3M0N)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: THBO-biosyn (64)

Family: PTPS (5)

Plasmodium vivax (strain Salvador I) (2)

PTPS-3m0nA01

A:18-171

Asymmetric Unit(hide GO term definitions)

Chain A (A5K2B2_PLAVS | A5K2B2)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 3m0n)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
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	4.2.3.12
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	A5K2B2_PLAVS \| A5K2B2	:	2a0s 3lx3 3lze

1y13	STRUCTURAL ANALYSIS OF PLASMODIUM FALCIPARUM 6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE (PTPS)
2a0s	CRYSTAL STRUCTURE OF 6-PYRUVOYL TETRAHYDROPTERIN SYNTHASE (PTPS) FROM PLASMODIUM VIVAX AT 2.2 A RESOLUTION
3lx3	PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS) IN COMPLEX WITH XANTHOPTERIN
3lze	PLASMODIUM VIVAX 6-PYRUVOYLTETRAHYDROPTERIN SYNTHASE (PTPS) , E37C CATALYTIC RESIDUE MUTANT RELATED ID: PVIV004546AAA RELATED DB: TARGETDB

Description

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Ligands, Modified Residues, Ions (2, 2)

Sites (2, 2)

SS Bonds (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 1)

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Pfam Domains (1, 1)

Gene Ontology (1, 1)

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Related Entries

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Related Entries Specified in the PDB File