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(-) Description

Title :  CRYSTAL STRUCTURE OF FERREDOXIN REDUCTASE ARR FROM NOVOSPHINGOBIUM AROMATICIVORANS
 
Authors :  W. Yang, S. G. Bell, H. Wang, M. Bartlam, L. L. Wong, Z. Rao
Date :  25 Feb 10  (Deposition) - 23 Jun 10  (Release) - 12 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Glutathione Reductase (Gr)-Like Onfr, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Yang, S. G. Bell, H. Wang, W. Zhou, N. Hoskins, A. Dale, M. Bartlam, L. L. Wong, Z. Rao
Molecular Characterization Of A Class I P450 Electron Transfer System From Novosphingobium Aromaticivorans Dsm12444
J. Biol. Chem. V. 285 27372 2010
PubMed-ID: 20576606  |  Reference-DOI: 10.1074/JBC.M110.118349

(-) Compounds

Molecule 1 - FAD-DEPENDENT PYRIDINE NUCLEOTIDE-DISULPHIDE OXIDOREDUCTASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SARO_0216
    Organism Scientific: NOVOSPHINGOBIUM AROMATICIVORANS
    Organism Taxid: 279238
    Strain: DSM 12444
    Synonym: FERREDOXIN REDUCTASE ARR

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:15 , GLY A:16 , GLY A:18 , HIS A:19 , GLY A:20 , ILE A:40 , ARG A:42 , GLU A:43 , ARG A:50 , PRO A:51 , SER A:54 , LYS A:55 , GLU A:87 , VAL A:88 , ALA A:114 , THR A:115 , GLY A:116 , VAL A:135 , GLY A:284 , ASP A:285 , GLU A:302 , SER A:303 , VAL A:304 , ALA A:307 , PHE A:331 , TRP A:332 , HOH A:450 , HOH A:454 , HOH A:460 , HOH A:474 , HOH A:478 , HOH A:493 , HOH A:530 , HOH A:573BINDING SITE FOR RESIDUE FAD A 416

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:124 -A:219

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ala A:130 -Gly A:131
2Asp A:234 -Gly A:235

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LXD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LXD)

(-) Exons   (0, 0)

(no "Exon" information available for 3LXD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:409
 aligned with Q2GBV9_NOVAD | Q2GBV9 from UniProtKB/TrEMBL  Length:415

    Alignment length:409
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406         
         Q2GBV9_NOVAD     7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDCVNMVKDYVQGKKLVEARAQIAPEQLADAGVPLKEMLA 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-3lxdA01 A:154-235                                                       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ----Pyr_redox_2-3lxdA02 A:11-291                                                                                                                                                                                                                                                             ---------------------------------------------------------------------------------------------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeeeee..hhhhhhhhhhhhhh.....eeeee........hhhhhh........hhhhh..hhhhhhhh.eeeee...eeeee....eeee....eeeeeeeee...ee.............ee...hhhhhhhhhhhhhh...eeeee..hhhhhhhhhhhhhh..eeeeee..........hhhhhhhhhhhhhhh..eeee...eeeeee....eeeeee....eee..eeee....ee.hhhhhhh.......ee...........eee....eeee.hhhh..ee...hhhhhhhhhhhhhhhhh..........eeeeee..eeeeeee......eeeeeeehhhheeeeeeee..eeeeeeee.hhhhhhhhhhhhhhh...hhhhhh....hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lxd A   7 AERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGGNGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPVPYKATPWFWSNQYDLKLQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDCVNMVKDYVQGKKLVEARAQIAPEQLADAGVPLKEMLA 415
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LXD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LXD)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q2GBV9_NOVAD | Q2GBV9)
molecular function
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3lxf ASSOCIATE [2FE-2S] FERREDOXIN ARX FROM NOVOSPHINGOBIUM AROMATICIVORANS
3lxh CRYSTAL STRUCTURE OF NATIVE CYTOCHROME P450 CYP101D1
3lxi CRYSTAL STRUCTURE OF CAMPHOR-BOUND CYP101D1