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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE SUCCINYLGLUTAMATE DESUCCINYLASE/ASPARTOACYLASE (YP_749235.1) FROM SHEWANELLA FRIGIDIMARINA NCIMB 400 AT 2.10 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  24 Feb 10  (Deposition) - 23 Mar 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Putative Succinylglutamate Desuccinylase/Aspartoacylase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase, Metal-Binding, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Succinylglutamate Desuccinylase/Aspartoacylase (Yp_749235. 1) From Shewanella Frigidimarina Ncimb 400 At 2. 10 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUCCINYLGLUTAMATE DESUCCINYLASE/ASPARTOACYLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SFRI_0536
    Organism Scientific: SHEWANELLA FRIGIDIMARINA
    Organism Taxid: 318167
    Strain: NCIMB 400

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric Unit (4, 12)
No.NameCountTypeFull Name
1MSE9Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
3UNL1Ligand/IonUNKNOWN LIGAND
4ZN1Ligand/IonZINC ION
Biological Unit 1 (3, 44)
No.NameCountTypeFull Name
1MSE36Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION
3UNL4Ligand/IonUNKNOWN LIGAND
4ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:44 , GLU A:47 , HIS A:173BINDING SITE FOR RESIDUE ZN A 374
2AC2SOFTWARESER A:150 , LYS A:293 , HIS A:295 , HOH A:422 , HOH A:429 , HOH A:544BINDING SITE FOR RESIDUE SO4 A 375

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LWU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3LWU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3LWU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3LWU)

(-) Exons   (0, 0)

(no "Exon" information available for 3LWU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:372
 aligned with Q088B8_SHEFN | Q088B8 from UniProtKB/TrEMBL  Length:372

    Alignment length:372
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370  
         Q088B8_SHEFN     1 MTKAIQSSVQVGELATGQALTVPIYSFMGSENSAPSVYIQANVHGAEVQGNAVIYQLMTLLEGYQVLGDITLAPLANPLGINQKSGEFTLGRFDPITGVNWNREYFDHNVDIQNWYAEHQHLTNSELFCAYRSMLVETCQARLTHSFGISTGHRLAVNLQAMAHQADIVLDLHTGPKSCKHLYCPEYDIDAARFFSIPYTLIIPNSFGGAMDEATFCPWWQLTEYATSQGREFSVPVSAFTLELASQERIDLADALEDAKGILAYLSHRGVIAEKVNPASMERFGCYLKDYKKFHAPKAGLIEYCASVGEPLTAGKPLVNILRIDLYGSEQAYQAISLPMDCVPILHFASASVLQGTELYKVMTNVFPLQPS 372
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains --------------------------------AstE_AspA-3lwuA01 A:33-365                                                                                                                                                                                                                                                                                                                   ------- Pfam domains
         Sec.struct. author ....eeeeeeeee.....eeeeeeeee.........eeeee......hhhhhhhhhhhhhhh.......eeee...hhhhhh.................hhhhh......hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeeeeee.ee..eeeee.hhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhhhhh........eeeeeeeee....hhhhhhhhhhhhhhhhhhh..............eeee...eeeee....eeeee............eeeeee.hhhh.hhh.eeeee.....eeeee....ee....eeeeee...ee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3lwu A   1 mTKAIQSSVQVGELATGQALTVPIYSFmGSENSAPSVYIQANVHGAEVQGNAVIYQLmTLLEGYQVLGDITLAPLANPLGINQKSGEFTLGRFDPITGVNWNREYFDHNVDIQNWYAEHQHLTNSELFCAYRSmLVETCQARLTHSFGISTGHRLAVNLQAmAHQADIVLDLHTGPKSCKHLYCPEYDIDAARFFSIPYTLIIPNSFGGAmDEATFCPWWQLTEYATSQGREFSVPVSAFTLELASQERIDLADALEDAKGILAYLSHRGVIAEKVNPASmERFGCYLKDYKKFHAPKAGLIEYCASVGEPLTAGKPLVNILRIDLYGSEQAYQAISLPmDCVPILHFASASVLQGTELYKVmTNVFPLQPS 372
                            |       10        20       |30        40        50       |60        70        80        90       100       110       120       130   |   140       150       160 |     170       180       190       200       210|      220       230       240       250       260       270       280|      290       300       310       320       330       340       350       360  |    370  
                            |                         28-MSE                        58-MSE                                                                     134-MSE                     162-MSE                                          211-MSE                                                               281-MSE                                                    340-MSE                363-MSE     
                            1-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3LWU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LWU)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Peptidase_MH (119)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q088B8_SHEFN | Q088B8)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016788    hydrolase activity, acting on ester bonds    Catalysis of the hydrolysis of any ester bond.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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