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(-) Description

Title :  CRYSTAL STRUCTURE OF STRUCTURAL GENOMICS, UNKNOWN FUNCTION (YP_766765.1) FROM RHIZOBIUM LEGUMINOSARUM BV. VICIAE 3841 AT 1.40 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  23 Feb 10  (Deposition) - 07 Apr 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Unknown Function, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Cupin Domain, Ethanolamine Utilization (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Structural Genomics, Unknown Function (Yp_766765. 1) From Rhizobium Leguminosarum Bv. Viciae 3841 At 1. 40 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: SEQUENCE DATABASE RESIDUES 14-131
    Gene: RL1159
    Organism Scientific: RHIZOBIUM LEGUMINOSARUM
    Organism Taxid: 216596
    Strain: BV. VICIAE STR. 3841

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric Unit (3, 8)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2MSE5Mod. Amino AcidSELENOMETHIONINE
3SO42Ligand/IonSULFATE ION
Biological Unit 1 (3, 16)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2MSE10Mod. Amino AcidSELENOMETHIONINE
3SO44Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:20 , ARG A:81 , VAL A:91 , THR A:92 , HOH A:135 , HOH A:159 , HOH A:180BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWAREARG A:19 , GLY A:41 , ASN A:42BINDING SITE FOR RESIDUE SO4 A 2
3AC3SOFTWAREPRO A:95 , GLY A:96 , HOH A:132 , HOH A:136BINDING SITE FOR RESIDUE EDO A 3

(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:50 -Pro A:51

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:104
 aligned with Q1MK54_RHIL3 | Q1MK54 from UniProtKB/TrEMBL  Length:131

    Alignment length:110
                                    25        35        45        55        65        75        85        95       105       115       125
         Q1MK54_RHIL3    16 MKMRKFTIADASLERSPGQEADISVGNLVDERHGGPITIGYGRYAPGQSLTETMAVDDVMIVLEGRLSVSTDGETVTAGPGEIVYMPKGETVTIRSHEEGALTAYVTYPH 125
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------------EutQ-3lwcA0      1 A:33-125                                                                   Pfam domains
         Sec.struct. author ......hhhhhhhhhh...eeeeeeeee------..eeeeeeee....eeeee...eeeeeeeeeeeeeee..eeeee....eeee....eeeeeeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3lwc A  16 mKmRKFTIADASLERSPGQEADISVGNL------GPITIGYGRYAPGQSLTETmAVDDVmIVLEGRLSVSTDGETVTAGPGEIVYmPKGETVTIRSHEEGALTAYVTYPH 125
                            | |     25        35       | -    |   55        65   |    75        85        95     | 105       115       125
                            | |                       43     50                 69-MSE |                       101-MSE                    
                           16-MSE                                                     75-MSE                                              
                             18-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Cupin (179)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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