3LOO - JenaLib

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Title :   CRYSTAL STRUCTURE OF ANOPHELES GAMBIAE ADENOSINE KINASE IN COMPLEX WITH P1,P4-DI(ADENOSINE-5) TETRAPHOSPHATE

Authors :   M. -C. Ho, M. B. Cassera, S. C. Almo, V. L. Schramm

Date :   04 Feb 10 (Deposition) - 02 Feb 11 (Release) - 06 Apr 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Anopheles Gambiae, Adenosine Kinase, Ap4A, P1, P4-Di(Adenosine-5) Tetraphosphate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. B. Cassera, M. C. Ho, E. F. Merino, E. S. Burgos, A. Rinaldo-Matthis, S. C. Almo, V. L. Schramm
A High-Affinity Adenosine Kinase From Anopheles Gambiae.
Biochemistry V. 50 1885 2011
PubMed-ID: 21247194 | Reference-DOI: 10.1021/BI101921W

Molecule 1 - ANOPHELES GAMBIAE ADENOSINE KINASE
	Chains	:	A, B, C
	EC Number	:	2.7.1.20
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PDEST-14
	Expression System Strain	:	BL21-AI
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	ANOPHELES GAMBIAE
	Organism Taxid	:	7165

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 9)

No.	Name	Count	Type	Full Name
1	B4P	3	Ligand/Ion	BIS(ADENOSINE)-5'-TETRAPHOSPHATE
2	CL	3	Ligand/Ion	CHLORIDE ION
3	MG	3	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	B4P	1	Ligand/Ion	BIS(ADENOSINE)-5'-TETRAPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	B4P	1	Ligand/Ion	BIS(ADENOSINE)-5'-TETRAPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	B4P	1	Ligand/Ion	BIS(ADENOSINE)-5'-TETRAPHOSPHATE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ASN A:14 , LEU A:16 , ASP A:18 , GLY A:64 , SER A:65 , ASN A:68 , CYS A:122 , ARG A:131 , LEU A:133 , ALA A:135 , PHE A:168 , ASN A:221 , THR A:263 , GLY A:265 , SER A:266 , VAL A:269 , VAL A:284 , GLN A:285 , LEU A:287 , ASN A:296 , GLY A:297 , ALA A:298 , GLY A:299 , ASP A:300 , ALA A:327 , ILE A:331 , MG A:350 , CL A:351 , HOH A:352 , HOH A:353 , HOH A:354 , HOH A:355 , HOH A:356 , HOH A:357 , HOH A:367 , HOH A:376 , HOH A:388 , HOH A:441	BINDING SITE FOR RESIDUE B4P A 349
2	AC2	SOFTWARE	B4P A:349 , HOH A:352 , HOH A:353 , HOH A:354 , HOH A:355	BINDING SITE FOR RESIDUE MG A 350
3	AC3	SOFTWARE	ASN A:14 , SER A:65 , VAL A:66 , SER A:166 , B4P A:349	BINDING SITE FOR RESIDUE CL A 351
4	AC4	SOFTWARE	ASN B:14 , LEU B:16 , ASP B:18 , GLY B:64 , SER B:65 , ASN B:68 , CYS B:122 , LEU B:133 , PHE B:168 , ASN B:221 , THR B:263 , GLY B:265 , SER B:266 , VAL B:269 , MET B:292 , ASN B:296 , GLY B:297 , ALA B:298 , GLY B:299 , ASP B:300 , ALA B:327 , ILE B:331 , MG B:350 , CL B:351 , HOH B:352 , HOH B:353 , HOH B:354 , HOH B:355 , HOH B:357 , HOH B:359 , HOH B:378 , HOH B:380 , HOH B:398 , HOH B:406	BINDING SITE FOR RESIDUE B4P B 349
5	AC5	SOFTWARE	B4P B:349 , HOH B:352 , HOH B:353 , HOH B:354 , HOH B:355	BINDING SITE FOR RESIDUE MG B 350
6	AC6	SOFTWARE	GLY B:13 , ASN B:14 , SER B:65 , VAL B:66 , SER B:166 , B4P B:349 , HOH B:360	BINDING SITE FOR RESIDUE CL B 351
7	AC7	SOFTWARE	ASN C:14 , ASP C:18 , GLY C:64 , SER C:65 , ASN C:68 , CYS C:122 , ARG C:131 , LEU C:133 , ALA C:135 , PHE C:168 , ASN C:221 , THR C:263 , GLY C:265 , VAL C:269 , GLN C:285 , LEU C:287 , ASN C:296 , GLY C:297 , ALA C:298 , GLY C:299 , ASP C:300 , ALA C:327 , ILE C:331 , MG C:350 , CL C:351 , HOH C:352 , HOH C:353 , HOH C:355 , HOH C:357 , HOH C:359 , HOH C:362 , HOH C:398 , HOH C:405 , HOH C:411	BINDING SITE FOR RESIDUE B4P C 349
8	AC8	SOFTWARE	B4P C:349 , HOH C:352 , HOH C:353 , HOH C:354 , HOH C:355	BINDING SITE FOR RESIDUE MG C 350
9	AC9	SOFTWARE	GLY C:13 , ASN C:14 , SER C:65 , VAL C:66 , SER C:166 , B4P C:349 , HOH C:360	BINDING SITE FOR RESIDUE CL C 351

(no "SS Bond" information available for 3LOO)

(no "Cis Peptide Bond" information available for 3LOO)

(no "SAP(SNP)/Variant" information available for 3LOO)

(no "PROSITE Motif" information available for 3LOO)

(no "Exon" information available for 3LOO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:335
                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains d3looa_ A: automated matches                                                                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...eeeeeee.hhhhhhhh.....eeee.hhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhh.eeeeeee.....eeeeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhh.....hhhhhhhhhhh..........eeeeee..eeeeeee......eee........hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3loo A   4 LRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLATNGAGDAFVGGFLAQLLQSRTVDVCIKCGIWAAREIIQRSGCTFEGEPSF 344
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283    || 299       309       319       329       339     
                                                                                                                                                                                                                                                                                                                      288|                                                 
                                                                                                                                                                                                                                                                                                                       295

Chain B from PDB  Type:PROTEIN  Length:341
                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d3loob_ B: automated matches                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...eeeeeee.hhhhhhhh......eee.hhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhhh.eeeeeee......eeeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhh.....hhhhhhhhhhh..........eeeeee..eeeeeee......eee.....hhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3loo B   4 LRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLAPEQMVDTNGAGDAFVGGFLAQLLQSRTVDVCIKCGIWAAREIIQRSGCTFEGEPSF 344
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343

Chain C from PDB  Type:PROTEIN  Length:321
                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d3looc_ C: automated matches                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee...eeeeeee.hhhhhhhh......eee.hhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhh....eeeeeeee.hhhhhhhhhhhhhh..eeeeeee......eeeeeee..eeeeeeehhhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhhh.eeeeehhhhhhhhhhhh....hhhhhhhhhhh..........eeeeee..eeeeeee......eee......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3loo C   4 LRDGMLVGLGNPLLDISAVVEKDLLNKYDMQPNNAILAEEKHMPMYQELIEKYQAEYIAGGSVQNSLRVAQWILQRPRTAIFFGCVGQDEYARILEERATSNGVNVQYQRSATSPTGTCAVLVTGTQRSLCANLAAANDFTPEHLRSDGNRAYLQGAQFFYVSGFFFTVSFESALSVAKEAAATGRMFMMNLSAPFVPQFYKNNLEEIFPYVDVLFGNETEAIALAKEFNYGTEDLREIGKRIAALPKENGKRKRIVIITQGSDPVLLIEAGTDNVREFPVQKLNGAGDAFVGGFLAQLLQSRTVDVCIKCGIWAAREIIQ 332
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283   ||  301       311       321       331 
                                                                                                                                                                                                                                                                                                                     287|                                    
                                                                                                                                                                                                                                                                                                                      296

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

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Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribokinase-like (226)

Superfamily: Ribokinase-like (189)

Family: automated matches (88)

Protein domain: automated matches (88)

African malaria mosquito (Anopheles gambiae) [TaxId: 7165] (1)

1a	d3looa_	A:
1b	d3loob_	B:
1c	d3looc_	C:

(no "CATH Domain" information available for 3LOO)

(no "Pfam Domain" information available for 3LOO)

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Description

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Ligands, Modified Residues, Ions (3, 9)

Sites (9, 9)

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