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(-) Description

Title :  CRYSTAL STRUCTURES OF CUPIN SUPERFAMILY BBDUF985 FROM BRANCHIOSTOMA BELCHERI TSINGTAUENSE IN THE APO AND GDP-BOUND FORMS
 
Authors :  C. Z. Zou, Y. Du, Y. -X. He, G. Saren, X. Zhang, Y. Chen, S. -C. Zhang
Date :  04 Feb 10  (Deposition) - 02 Jun 10  (Release) - 02 Jun 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Beta Barrel, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Z. Zou, Y. Du, Y. -X. He, G. Saren, X. Zhang, Y. Chen, S. -C. Zhang
Crystal Structures Of The Apo And Gdp-Bound Forms Of A Cupin-Like Protein Bbduf985 From Branchiostoma Belcheri Tsingtauense
Proteins 2010
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: BRANCHIOSTOMA BELCHERI TSINGTAUENSE
    Organism Taxid: 155462
    Synonym: CUPIN SUPERFAMILY HYPOTHETICAL BBDUF985

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ala A:137 -Pro A:138

 Sequence-Structure Mapping

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:161
 aligned with Q6WRH7_BRABE | Q6WRH7 from UniProtKB/TrEMBL  Length:172

    Alignment length:161
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169 
         Q6WRH7_BRABE    10 EEVKRLIALYELTPHPASGGWFRETYRSDVQVEAEGFDGKRSVLTMIYYLMQAGQPDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEVDGYCLASVLVAPGFDFKDFSLGKREELIKEYPQHRDVIMRCTSS 170
               SCOP domains d3loia_ A: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --Cupin_5-3loiA01 A:12-149                                                                                                                  --------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh..ee......eeeeeee...ee........ee..eeeeeeee....eeeee...eeeeeeeee..eeeeee.....eeeeee...........eeee....eeeeee..eeeeeeeee...hhhhhee.hhhhhhhhh..hhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3loi A  10 EEVKRLIALYELTPHPASGGWFRETYRSDVQVEAEGFDGKRSVLTMIYYLMQAGQPDPFHRVKSDETFVHNLGGSMKIHMIHPDGSYSCSILGNPLEHPEARHQVVVPRRVWFAQEVDGYCLASVLVAPGFDFKDFSLGKREELIKEYPQHRDVIMRCTSS 170
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: Cupin (179)

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    Ala A:137 - Pro A:138   [ RasMol ]  
 
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