3LHB - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   THE 2.7 ANGSTROM CRYSTAL STRUCTURE OF DEOXYGENATED HEMOGLOBIN FROM THE SEA LAMPREY (PETROMYZON MARINUS)

Authors :   H. A. Heaslet, W. E. Royer Jr.

Date :   12 Jan 99 (Deposition) - 20 Jan 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.70

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: I,J  (1x)
Biol. Unit 6: K,L  (1x)

Keywords :   Hemoglobin, Oxygen Transport, Bohr Effect, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. A. Heaslet, W. E. Royer Jr.
The 2. 7 A Crystal Structure Of Deoxygenated Hemoglobin From The Sea Lamprey (Petromyzon Marinus): Structural Basis For A Lowered Oxygen Affinity And Bohr Effect.
Structure Fold. Des. V. 7 517 1999
PubMed-ID: 10378271 | Reference-DOI: 10.1016/S0969-2126(99)80068-9
(for further references see the PDB file header)

Molecule 1 - PROTEIN (HEMOGLOBIN)
	Cell	:	RED BLOOD CELL
	Cellular Location	:	CYTOPLASM
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	Organism Common	:	SEA LAMPREY
	Organism Scientific	:	PETROMYZON MARINUS
	Organism Taxid	:	7757
	Other Details	:	COMPONENT FIVE(5) OF SIX(6) HEMOGLOBINS ISOLATED FROM P.MARINUS.

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H
Biological Unit 5 (1x)	:									I	J
Biological Unit 6 (1x)	:											K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	HEM	12	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 4 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 5 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Biological Unit 6 (1, 2)

No.	Name	Count	Type	Full Name
1	HEM	2	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (24, 24)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:51 , PHE A:52 , LYS A:54 , HIS A:73 , ARG A:76 , LYS A:104 , HIS A:105 , PHE A:109 , VAL A:111 , TYR A:115 , PHE A:116 , LEU A:119 , LEU A:145	BINDING SITE FOR RESIDUE HEM A 150
02	AC2	SOFTWARE	PHE B:51 , PHE B:52 , LYS B:54 , HIS B:73 , ARG B:76 , ALA B:80 , LYS B:104 , HIS B:105 , PHE B:109 , VAL B:111 , TYR B:115 , PHE B:116 , LEU B:119 , LEU B:145	BINDING SITE FOR RESIDUE HEM B 150
03	AC3	SOFTWARE	PHE C:51 , PHE C:52 , LYS C:54 , HIS C:73 , ARG C:76 , ALA C:80 , LYS C:104 , HIS C:105 , PHE C:109 , VAL C:111 , TYR C:115 , PHE C:116 , LEU C:119 , LEU C:145	BINDING SITE FOR RESIDUE HEM C 150
04	AC4	SOFTWARE	PHE D:51 , PHE D:52 , LYS D:54 , HIS D:73 , ARG D:76 , LYS D:104 , HIS D:105 , PHE D:109 , VAL D:111 , TYR D:115 , PHE D:116 , LEU D:119 , LEU D:145	BINDING SITE FOR RESIDUE HEM D 150
05	AC5	SOFTWARE	PHE E:51 , PHE E:52 , LYS E:54 , HIS E:73 , ARG E:76 , ALA E:80 , LYS E:104 , HIS E:105 , PHE E:109 , VAL E:111 , TYR E:115 , PHE E:116 , LEU E:119 , LEU E:145	BINDING SITE FOR RESIDUE HEM E 150
06	AC6	SOFTWARE	PHE F:51 , PHE F:52 , LYS F:54 , HIS F:73 , ARG F:76 , LYS F:104 , HIS F:105 , PHE F:109 , VAL F:111 , TYR F:115 , PHE F:116 , LEU F:119 , LEU F:145	BINDING SITE FOR RESIDUE HEM F 150
07	AC7	SOFTWARE	PHE G:51 , PHE G:52 , LYS G:54 , HIS G:73 , ARG G:76 , LYS G:104 , HIS G:105 , PHE G:109 , VAL G:111 , TYR G:115 , PHE G:116 , LEU G:119 , LEU G:145	BINDING SITE FOR RESIDUE HEM G 150
08	AC8	SOFTWARE	PHE H:51 , PHE H:52 , LYS H:54 , HIS H:73 , ARG H:76 , LYS H:104 , HIS H:105 , PHE H:109 , VAL H:111 , TYR H:115 , LEU H:119 , LEU H:145	BINDING SITE FOR RESIDUE HEM H 150
09	AC9	SOFTWARE	PHE I:51 , PHE I:52 , LYS I:54 , HIS I:73 , ARG I:76 , ALA I:80 , LYS I:104 , HIS I:105 , PHE I:109 , VAL I:111 , TYR I:115 , PHE I:116 , LEU I:119 , LEU I:145	BINDING SITE FOR RESIDUE HEM I 150
10	BC1	SOFTWARE	PHE J:51 , PHE J:52 , LYS J:54 , HIS J:73 , ARG J:76 , LYS J:104 , HIS J:105 , PHE J:109 , VAL J:111 , TYR J:115 , PHE J:116 , LEU J:119 , LEU J:145	BINDING SITE FOR RESIDUE HEM J 150
11	BC2	SOFTWARE	PHE K:51 , PHE K:52 , LYS K:54 , HIS K:73 , ARG K:76 , ALA K:80 , LYS K:104 , HIS K:105 , PHE K:109 , VAL K:111 , TYR K:115 , PHE K:116 , LEU K:119 , LEU K:145	BINDING SITE FOR RESIDUE HEM K 150
12	BC3	SOFTWARE	PHE L:51 , PHE L:52 , LYS L:54 , HIS L:73 , ARG L:76 , LYS L:104 , HIS L:105 , PHE L:109 , VAL L:111 , TYR L:115 , PHE L:116 , LEU L:119 , LEU L:145	BINDING SITE FOR RESIDUE HEM L 150
13	F10	AUTHOR	HIS J:73 , HIS J:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
14	F11	AUTHOR	HIS K:73 , HIS K:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
15	F12	AUTHOR	HIS L:73 , HIS L:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
16	FE1	AUTHOR	HIS A:73 , HIS A:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
17	FE2	AUTHOR	HIS B:73 , HIS B:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
18	FE3	AUTHOR	HIS C:73 , HIS C:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
19	FE4	AUTHOR	HIS D:73 , HIS D:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
20	FE5	AUTHOR	HIS E:73 , HIS E:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
21	FE6	AUTHOR	HIS F:73 , HIS F:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
22	FE7	AUTHOR	HIS G:73 , HIS G:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
23	FE8	AUTHOR	HIS H:73 , HIS H:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE
24	FE9	AUTHOR	HIS I:73 , HIS I:105	HIS 73 IS THE PROXIMAL HISTIDINE AND HIS 105 IS THE DISTAL HISTIDINE

(no "SS Bond" information available for 3LHB)

(no "Cis Peptide Bond" information available for 3LHB)

Asymmetric Unit (1, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	A/B/C/D/E/F/G/H/I/J/K/L	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	A/B	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	C/D	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	E/F	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	G/H	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 5 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	I/J	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 6 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_GLB5_PETMA_001 *	T	30	N	GLB5_PETMA	---	---	K/L	T	29	N
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 12)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	12	A:9-149 B:9-149 C:9-149 D:9-149 E:9-149 F:9-149 G:9-149 H:9-149 I:9-149 J:9-149 K:9-149 L:9-149

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	2	A:9-149 B:9-149 - - - - - - - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	2	- - C:9-149 D:9-149 - - - - - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	2	- - - - E:9-149 F:9-149 - - - - - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	2	- - - - - - G:9-149 H:9-149 - - - -

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	2	- - - - - - - - I:9-149 J:9-149 - -

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	GLB5_PETMA	10-150	2	- - - - - - - - - - K:9-149 L:9-149

(no "Exon" information available for 3LHB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhba_ A: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbA00 A:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: A:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb A   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbb_ B: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbB00 B:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: B:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb B   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbc_ C: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbC00 C:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: C:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb C   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain D from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbd_ D: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbD00 D:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: D:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb D   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain E from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbe_ E: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbE00 E:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: E:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb E   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain F from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbf_ F: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbF00 F:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: F:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb F   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain G from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbg_ G: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbG00 G:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: G:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb G   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain H from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbh_ H: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbH00 H:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: H:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb H   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain I from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbi_ I: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbI00 I:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: I:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb I   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain J from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbj_ J: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbJ00 J:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: J:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb J   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain K from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbk_ K: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbK00 K:1-149 Globins                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: K:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb K   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain L from PDB  Type:PROTEIN  Length:149
 aligned with GLB5_PETMA | P02208 from UniProtKB/Swiss-Prot  Length:150

    Alignment length:149
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141         
           GLB5_PETMA     2 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADQLKKSADVRWHAERIINAVNDAVASMDDTEKMSMKLRDLSGKHAKSFQVDPQYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 150
               SCOP domains d3lhbl_ L: Lamprey globin                                                                                                                             SCOP domains
               CATH domains 3lhbL00 L:1-149 Globins                                                                                                                               CATH domains
           Pfam domains (1) --------------Globin-3lhbL01 L:15-124                                                                                       ------------------------- Pfam domains (1)
           Pfam domains (2) --------------Globin-3lhbL02 L:15-124                                                                                       ------------------------- Pfam domains (2)
           Pfam domains (3) --------------Globin-3lhbL03 L:15-124                                                                                       ------------------------- Pfam domains (3)
           Pfam domains (4) --------------Globin-3lhbL04 L:15-124                                                                                       ------------------------- Pfam domains (4)
           Pfam domains (5) --------------Globin-3lhbL05 L:15-124                                                                                       ------------------------- Pfam domains (5)
           Pfam domains (6) --------------Globin-3lhbL06 L:15-124                                                                                       ------------------------- Pfam domains (6)
           Pfam domains (7) --------------Globin-3lhbL07 L:15-124                                                                                       ------------------------- Pfam domains (7)
           Pfam domains (8) --------------Globin-3lhbL08 L:15-124                                                                                       ------------------------- Pfam domains (8)
           Pfam domains (9) --------------Globin-3lhbL09 L:15-124                                                                                       ------------------------- Pfam domains (9)
          Pfam domains (10) --------------Globin-3lhbL10 L:15-124                                                                                       ------------------------- Pfam domains (10)
          Pfam domains (11) --------------Globin-3lhbL11 L:15-124                                                                                       ------------------------- Pfam domains (11)
          Pfam domains (12) --------------Globin-3lhbL12 L:15-124                                                                                       ------------------------- Pfam domains (12)
         Sec.struct. author ...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------N------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------GLOBIN  PDB: L:9-149 UniProt: 10-150                                                                                                          PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3lhb L   1 PIVDTGSVAPLSAAEKTKIRSAWAPVYSTYETSGVDILVKFFTSTPAAQEFFPKFKGLTTADELKKSADVRWHAERIINAVDDAVASMDDTEKMSMKLRNLSGKHAKSFQVDPEYFKVLAAVIADTVAAGDAGFEKLMSMICILLRSAY 149
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Globins (1157)

Protein domain: Lamprey globin (5)

Sea lamprey (Petromyzon marinus) [TaxId: 7757] (4)

1a	d3lhba_	A:
1b	d3lhbj_	J:
1c	d3lhbk_	K:
1d	d3lhbl_	L:
1e	d3lhbb_	B:
1f	d3lhbc_	C:
1g	d3lhbd_	D:
1h	d3lhbe_	E:
1i	d3lhbf_	F:
1j	d3lhbg_	G:
1k	d3lhbh_	H:
1l	d3lhbi_	I:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Globins (743)

Sea lamprey (Petromyzon marinus) (4)

1a	3lhbA00	A:1-149
1b	3lhbJ00	J:1-149
1c	3lhbK00	K:1-149
1d	3lhbL00	L:1-149
1e	3lhbB00	B:1-149
1f	3lhbC00	C:1-149
1g	3lhbD00	D:1-149
1h	3lhbE00	E:1-149
1i	3lhbF00	F:1-149
1j	3lhbG00	G:1-149
1k	3lhbH00	H:1-149
1l	3lhbI00	I:1-149

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Globin (291)

Family: Globin (264)

Petromyzon marinus (Sea lamprey) (1)

1a	Globin-3lhbL01	L:15-124
1b	Globin-3lhbL02	L:15-124
1c	Globin-3lhbL03	L:15-124
1d	Globin-3lhbL04	L:15-124
1e	Globin-3lhbL05	L:15-124
1f	Globin-3lhbL06	L:15-124
1g	Globin-3lhbL07	L:15-124
1h	Globin-3lhbL08	L:15-124
1i	Globin-3lhbL09	L:15-124
1j	Globin-3lhbL10	L:15-124
1k	Globin-3lhbL11	L:15-124
1l	Globin-3lhbL12	L:15-124

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (GLB5_PETMA | P02208)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

Asymmetric Unit
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	Cis Peptide Bonds
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	3lhb
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	GLB5_PETMA \| P02208	:	1f5o 1f5p 2lhb

(no "Related Entries Specified in the PDB File" available for 3LHB)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (24, 24)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 12)

PROSITE Motifs (1, 12)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (1, 12)

Gene Ontology (7, 7)

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Related Entries Specified in the PDB File