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(-) Description

Title :  CRYSTAL STRUCTURE OF THE LIN0431 PROTEIN FROM LISTERIA INNOCUA, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LKR112
 
Authors :  S. Vorobiev, Y. Chen, D. Lee, D. J. Patel, C. Ciccosanti, S. Sahdev, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  12 Jan 10  (Deposition) - 26 Jan 10  (Release) - 26 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Lin0431, Duf1312, Pf07009, Lkr112, Nesg, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Vorobiev, Y. Chen, D. Lee, D. J. Patel, C. Ciccosanti, S. Sahdev, T. B. Acton, R. Xiao, J. K. Everett, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Lin0431 Protein From Listeria Innocua
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LIN0431 PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3) +MAGIC
    Expression System Taxid: 469008
    Expression System Vector: PET 21-23C
    Fragment: SEQUENCE DATABASE RESIDUES 36-127
    Gene: LIN0431
    Organism Scientific: LISTERIA INNOCUA
    Organism Taxid: 1642
    Strain: CLIP 11262/SEROVAR 6A

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 6)

Asymmetric Unit (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3LD7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3LD7)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:87
 aligned with Q92EM7_LISIN | Q92EM7 from UniProtKB/TrEMBL  Length:140

    Alignment length:87
                                    48        58        68        78        88        98       108       118       
         Q92EM7_LISIN    39 GDEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKST 125
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee..eeeeeee......eeeeeee.....eeeeeee..eeeeeee....hhhhhhh.......eeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3ld7 A  39 GDEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLmEVDGERIRIKEDNSPDQVGVKmGWKSKAGDTIVCLPHKVFVEIKST 125
                                    48        58        68        78|       88        98  |    108       118       
                                                                   79-MSE               101-MSE                    


Chain B from PDB  Type:PROTEIN  Length:87
 aligned with Q92EM7_LISIN | Q92EM7 from UniProtKB/TrEMBL  Length:140

    Alignment length:87
                                    49        59        69        79        89        99       109       119       
         Q92EM7_LISIN    40 DEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTQ 126
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee..eeeeeee......eeeeeee.....eeeeeee..eeeeeee....hhhhhhh.......eeee....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3ld7 B  40 DEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLmEVDGERIRIKEDNSPDQVGVKmGWKSKAGDTIVCLPHKVFVEIKSTQ 126
                                    49        59        69        79        89        99 |     109       119       
                                                                  79-MSE               101-MSE                     


Chain C from PDB  Type:PROTEIN  Length:87
 aligned with Q92EM7_LISIN | Q92EM7 from UniProtKB/TrEMBL  Length:140

    Alignment length:87
                                    49        59        69        79        89        99       109       119       
         Q92EM7_LISIN    40 DEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTQ 126
               SCOP domains --------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DUF1312-3ld7C01 C:40-126                                                                Pfam domains (1)
           Pfam domains (2) DUF1312-3ld7C02 C:40-126                                                                Pfam domains (2)
           Pfam domains (3) DUF1312-3ld7C03 C:40-126                                                                Pfam domains (3)
         Sec.struct. author ..eeeeeee..eeeeeee......eeeeeee.....eeeeeee..eeeeeee....hhhhhhh.......eeeehhh.eeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------- Transcript
                 3ld7 C  40 DEVVAIISQNGKVIREIPLTGHKGNEQFTIKGKGAQYNLmEVDGERIRIKEDNSPDQVGVKmGWKSKAGDTIVCLPHKVFVEIKSTQ 126
                                    49        59        69        79        89        99 |     109       119       
                                                                  79-MSE               101-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3LD7)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF1312] (2)

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