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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE RNA-BINDING PROTEIN (NP_785364.1) FROM LACTOBACILLUS PLANTARUM AT 1.45 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  01 Dec 09  (Deposition) - 22 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Putative Rna-Binding Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Rna-Binding Protein (Np_785364. 1) From Lactobacillus Plantarum At 1. 45 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE RNA-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LP_1800
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric/Biological Unit (3, 4)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE2Mod. Amino AcidSELENOMETHIONINE
3SO41Ligand/IonSULFATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:77 , GLN A:84 , PHE A:85 , GLY A:86 , GOL A:98 , HOH A:127 , ARG B:68BINDING SITE FOR RESIDUE SO4 A 97
2AC2SOFTWAREPRO A:64 , VAL A:75 , TRP A:77 , PHE A:85 , SO4 A:97 , HOH A:100 , HOH A:103 , HOH A:166 , HOH A:204 , ALA B:36 , SER B:37 , HOH B:141BINDING SITE FOR RESIDUE GOL A 98

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KWR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KWR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KWR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KWR)

(-) Exons   (0, 0)

(no "Exon" information available for 3KWR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:83
 aligned with F9UPE7_LACPL | F9UPE7 from UniProtKB/TrEMBL  Length:96

    Alignment length:83
                                    16        26        36        46        56        66        76        86   
          F9UPE7_LACPL    7 EVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFVVWITMADVQFGPGA 89
               SCOP domains ----------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeee...hhhhheee.hhhhhhhhhhhhhhhhhh........hhhhh.....eeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------- Transcript
                  3kwr A  7 EVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFVVWITmADVQFGPGA 89
                                    16        26        36        46        56        66        76   |    86   
                                                                                                    80-MSE     


Chain B from PDB  Type:PROTEIN  Length:82
 aligned with F9UPE7_LACPL | F9UPE7 from UniProtKB/TrEMBL  Length:96

    Alignment length:82
                                    16        26        36        46        56        66        76        86  
          F9UPE7_LACPL    7 EVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFVVWITMADVQFGPG 88
               SCOP domains ---------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....eeee...hhhhheee.hhhhhhhhhhhhhhhhh.........hhhhh.....eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                  3kwr B  7 EVKYPAIFRDEGTYWDVRFPDVPAAQTFGASVQVAADNAANALAIALFEQSLPPASDPQYWRLASTEFVVWITmADVQFGPG 88
                                    16        26        36        46        56        66        76   |    86  
                                                                                                    80-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KWR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KWR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KWR)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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