3KV5 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   STRUCTURE OF KIAA1718, HUMAN JUMONJI DEMETHYLASE, IN COMPLEX WITH N-OXALYLGLYCINE

Authors :   J. R. Horton, A. K. Upadhyay, H. H. Qi, X. Zhang, Y. Shi, X. Cheng

Date :   29 Nov 09 (Deposition) - 22 Dec 09 (Release) - 09 Feb 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.39

Chains :   Asym. Unit : A,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: D  (1x)
Biol. Unit 3: A (1x),D (1x)

Keywords :   Epigenetics, Histone Code, Jumonji Lysine Demethylase, Metal-Binding, Zinc, Zinc-Finger (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Horton, A. K. Upadhyay, H. H. Qi, X. Zhang, Y. Shi, X. Cheng
Enzymatic And Structural Insights For Substrate Specificity Of A Family Of Jumonji Histone Lysine Demethylases.
Nat. Struct. Mol. Biol. V. 17 38 2010
PubMed-ID: 20023638 | Reference-DOI: 10.1038/NSMB.1753

Molecule 1 - JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1D
	Chains	:	D, A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PXC720
	Expression System Strain	:	BL21(DE3)CODONPLUS
	Expression System Taxid	:	562
	Fragment	:	RESIDUES 1-488
	Gene	:	JHDM1D, KIAA1718
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2
Asymmetric Unit	:	A	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		D
Biological Unit 3 (1x)	:	A (1x)	D (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 10)

No.	Name	Count	Type	Full Name
1	FE2	3	Ligand/Ion	FE (II) ION
2	OGA	1	Ligand/Ion	N-OXALYLGLYCINE
3	SO4	2	Ligand/Ion	SULFATE ION
4	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	FE2	2	Ligand/Ion	FE (II) ION
2	OGA	1	Ligand/Ion	N-OXALYLGLYCINE
3	SO4	1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	FE2	1	Ligand/Ion	FE (II) ION
2	OGA	-1	Ligand/Ion	N-OXALYLGLYCINE
3	SO4	1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (3, 4)

No.	Name	Count	Type	Full Name
1	FE2	2	Ligand/Ion	FE (II) ION
2	OGA	1	Ligand/Ion	N-OXALYLGLYCINE
3	SO4	1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS D:55 , CYS D:58 , CYS D:82 , CYS D:85	BINDING SITE FOR RESIDUE ZN D 489
02	AC2	SOFTWARE	CYS D:40 , CYS D:42 , HIS D:63 , CYS D:66	BINDING SITE FOR RESIDUE ZN D 490
03	AC3	SOFTWARE	HIS D:282 , ASP D:284 , TYR D:292 , HIS D:354	BINDING SITE FOR RESIDUE FE2 D 491
04	AC4	SOFTWARE	HIS A:154 , ARG D:149 , TYR D:150 , LYS D:153 , HIS D:154 , HOH D:583 , HOH D:584	BINDING SITE FOR RESIDUE SO4 D 492
05	AC5	SOFTWARE	CYS A:55 , CYS A:58 , CYS A:82 , CYS A:85	BINDING SITE FOR RESIDUE ZN A 489
06	AC6	SOFTWARE	CYS A:40 , CYS A:42 , HIS A:63 , CYS A:66	BINDING SITE FOR RESIDUE ZN A 490
07	AC7	SOFTWARE	HIS A:282 , ASP A:284 , TYR A:292 , HIS A:354 , OGA A:5798	BINDING SITE FOR RESIDUE FE2 A 491
08	AC8	SOFTWARE	ASP A:56 , ILE A:57 , HIS A:81	BINDING SITE FOR RESIDUE FE2 A 492
09	AC9	SOFTWARE	ARG A:149 , TYR A:150 , LYS A:153 , HIS A:154 , HOH A:601	BINDING SITE FOR RESIDUE SO4 A 493
10	BC1	SOFTWARE	ILE A:226 , HIS A:282 , ASP A:284 , TYR A:292 , LYS A:299 , VAL A:356 , HOH A:543 , HOH A:580	BINDING SITE FOR RESIDUE OGA A 5798

(no "SS Bond" information available for 3KV5)

(no "Cis Peptide Bond" information available for 3KV5)

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049652	D	392	Y	KDM7A_HUMAN	Polymorphism	5020212	A/D	D	392	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049652	D	392	Y	KDM7A_HUMAN	Polymorphism	5020212	A	D	392	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049652	D	392	Y	KDM7A_HUMAN	Polymorphism	5020212	D	D	392	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_049652	D	392	Y	KDM7A_HUMAN	Polymorphism	5020212	A/D	D	392	Y

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_PHD_2	PS50016	Zinc finger PHD-type profile.	KDM7A_HUMAN	37-88	2	A:37-88 D:37-88
2	ZF_PHD_1	PS01359	Zinc finger PHD-type signature.	KDM7A_HUMAN	40-85	2	A:40-85 D:40-85
3	JMJC	PS51184	JmjC domain profile.	KDM7A_HUMAN	230-386	2	A:230-386 D:230-386

Biological Unit 1 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_PHD_2	PS50016	Zinc finger PHD-type profile.	KDM7A_HUMAN	37-88	1	A:37-88 -
2	ZF_PHD_1	PS01359	Zinc finger PHD-type signature.	KDM7A_HUMAN	40-85	1	A:40-85 -
3	JMJC	PS51184	JmjC domain profile.	KDM7A_HUMAN	230-386	1	A:230-386 -

Biological Unit 2 (3, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_PHD_2	PS50016	Zinc finger PHD-type profile.	KDM7A_HUMAN	37-88	1	- D:37-88
2	ZF_PHD_1	PS01359	Zinc finger PHD-type signature.	KDM7A_HUMAN	40-85	1	- D:40-85
3	JMJC	PS51184	JmjC domain profile.	KDM7A_HUMAN	230-386	1	- D:230-386

Biological Unit 3 (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_PHD_2	PS50016	Zinc finger PHD-type profile.	KDM7A_HUMAN	37-88	2	A:37-88 D:37-88
2	ZF_PHD_1	PS01359	Zinc finger PHD-type signature.	KDM7A_HUMAN	40-85	2	A:40-85 D:40-85
3	JMJC	PS51184	JmjC domain profile.	KDM7A_HUMAN	230-386	2	A:230-386 D:230-386

(no "Exon" information available for 3KV5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:447
 aligned with KDM7A_HUMAN | Q6ZMT4 from UniProtKB/Swiss-Prot  Length:941

    Alignment length:447
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       
          KDM7A_HUMAN    33 PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEEN 479
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eee......eeehhhhh....hhh.eee..hhhhhhhhh..ee........................hhhhhhhhhhh...hhhhh.ee......hhhhhhhhh....eee...............hhhhhhhhhh...eeeeee.....eeeeehhhhhhhhhh......eeeeeee...hhhhhhh..hhhhhhhhhhhhhh.............eeeee....eeeee.hhhhheeeeeeeeeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhh....eeeeee...eeee....eeeeeeeeeeeeeeeee....hhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----ZF_PHD_2  PDB: A:37-88 UniProt: 37-88               ---------------------------------------------------------------------------------------------------------------------------------------------JMJC  PDB: A:230-386 UniProt: 230-386                                                                                                                        --------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -------ZF_PHD_1  PDB: A:40-85 UniProt: 40-85         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kv5 A  33 PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEEN 479
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472

Chain D from PDB  Type:PROTEIN  Length:445
 aligned with KDM7A_HUMAN | Q6ZMT4 from UniProtKB/Swiss-Prot  Length:941

    Alignment length:448
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471        
          KDM7A_HUMAN    32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKELVSEHAFEIPDNVRPGHLIKELSKVIRAIEEEN 479
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......ee....ee......eee......eeehhhhh.hhhhhh.eee..hhhhhhhhh..ee........................hhhhhhhhhhh...hhhhh.ee.hhhhhhhhhhhhhh....eee...............hhhhhhhhhh...eeeeee.....eeeeehhhhhhhhhh......eeeeeee...hhhhhhh..hhhhhhhhhhhhhh.............eeeee....eeeee.hhhhheeeeeeeeeeeeeeee..hhhhhhhhhhhhh..hhhhhhhhhh....eeeeee...eeee....eeeeeeeeeeeeeeeee....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....---hhhhh......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Y--------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----ZF_PHD_2  PDB: D:37-88 UniProt: 37-88               ---------------------------------------------------------------------------------------------------------------------------------------------JMJC  PDB: D:230-386 UniProt: 230-386                                                                                                                        --------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) --------ZF_PHD_1  PDB: D:40-85 UniProt: 40-85         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kv5 D  32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTRTFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLDDLGLRLPSPTFSVMDVERYVGGDKVIDVIDVARQADSKMTLHNYVKYFMNPNRPKVLNVISLEFSDTKMSELVEVPDIAKKLSWVENYWPDDSVFPKPFVQKYCLMGVQDSYTDFHIDFGGTSVWYHVLWGEKIFYLIKPTDENLARYESWSSSVTQSEVFFGDKVDKCYKCVVKQGHTLFVPTGWIHAVLTSQDCMAFGGNFLHNLNIGMQLRCYEMEKRLKTPDLFKFPFFEAICWFVAKNLLETLKELREDGFQPQTYLVQGVKALHTALKLWMKKEL---HAFEIPDNVRPGHLIKELSKVIRAIEEEN 479
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441     | 451       461       471        
                                                                                                                                                                                                                                                                                                                                                                                                                                                         447 451

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3KV5)

(no "CATH Domain" information available for 3KV5)

(no "Pfam Domain" information available for 3KV5)

Asymmetric Unit(hide GO term definitions)

Chain A,D (KDM7A_HUMAN | Q6ZMT4)

molecular function
	GO:0051213	dioxygenase activity	Catalysis of an oxidation-reduction (redox) reaction in which both atoms of oxygen from one molecule of O2 are incorporated into the (reduced) product(s) of the reaction. The two atoms of oxygen may be distributed between two different products.
	GO:0032452	histone demethylase activity	Catalysis of the removal of a methyl group from a histone.
	GO:0071558	histone demethylase activity (H3-K27 specific)	Catalysis of the removal of a methyl group from lysine at position 27 of the histone H3 protein.
	GO:0051864	histone demethylase activity (H3-K36 specific)	Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 36) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 36 of the histone H3 protein.
	GO:0032454	histone demethylase activity (H3-K9 specific)	Catalysis of the reaction: histone H3 N6-methyl-L-lysine (position 9) + alpha-ketoglutarate + O2 = succinate + CO2 + formaldehyde + lysine. This reaction is the removal of a methyl group from lysine at position 9 of the histone H3 protein.
	GO:0035575	histone demethylase activity (H4-K20 specific)	Catalysis of the reaction: histone H4 N6-methyl-L-lysine (position 20) + 2-oxoglutarate + O2 = histone H4 L-lysine (position 20) + succinate + formaldehyde + CO2. This reaction is the removal of a methyl group from lysine at position 20 of the histone H4 protein.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0035064	methylated histone binding	Interacting selectively and non-covalently with a histone in which a residue has been modified by methylation. Histones are any of a group of water-soluble proteins found in association with the DNA of eukaroytic chromosomes.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0016706	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	Catalysis of the reaction: A + 2-oxoglutarate + O2 = B + succinate + CO2. This is an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from 2-oxoglutarate and one other donor, and one atom of oxygen is incorporated into each donor.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0071557	histone H3-K27 demethylation	The modification of histone H3 by the removal of a methyl group from lysine at position 27 of the histone.
	GO:0070544	histone H3-K36 demethylation	The modification of histone H3 by the removal of a methyl group from lysine at position 36 of the histone.
	GO:0033169	histone H3-K9 demethylation	The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone.
	GO:0035574	histone H4-K20 demethylation	The modification of histone H4 by the removal of a methyl group from lysine at position 20 of the histone.
	GO:0030901	midbrain development	The process whose specific outcome is the progression of the midbrain over time, from its formation to the mature structure. The midbrain is the middle division of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes a ventral part containing the cerebral peduncles and a dorsal tectum containing the corpora quadrigemina and that surrounds the aqueduct of Sylvius connecting the third and fourth ventricles).
	GO:0007399	nervous system development	The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0045893	positive regulation of transcription, DNA-templated	Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	KDM7A_HUMAN \| Q6ZMT4
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	KDM7A_HUMAN \| Q6ZMT4	:	3kv6 3kv9 3kva 3kvb 3u78

3kv4	STRUCTURE OF PHF8 IN COMPLEX WITH HISTONE H3
3kv6
3kv9
3kva
3kvb

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 10)

Sites (10, 10)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (3, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (25, 25)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File