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(-) Description

Title :  CRYSTAL STRUCTURE OF DIPEPTIDE EPIMERASE FROM ENTEROCOCCUS FAECALIS V583 COMPLEXED WITH MG AND DIPEPTIDE L-ARG-L-TYR
 
Authors :  A. A. Fedorov, E. V. Fedorov, A. Sakai, J. A. Gerlt, S. C. Almo
Date :  27 Nov 09  (Deposition) - 13 Oct 10  (Release) - 23 May 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Enolase Superfamily, Dipeptide L-Arg-L-Tyr, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Lukk, A. Sakai, C. Kalyanaraman, S. D. Brown, H. J. Imker, L. Song, A. A. Fedorov, E. V. Fedorov, R. Toro, B. Hillerich, R. Seidel, Y. Patskovsky, M. W. Vetting, S. K. Nair, P. C. Babbitt, S. C. Almo, J. A. Gerlt, M. P. Jacobson
Homology Models Guide Discovery Of Diverse Enzyme Specificities Among Dipeptide Epimerases In The Enolase Superfamily.
Proc. Natl. Acad. Sci. Usa V. 109 4122 2012
PubMed-ID: 22392983  |  Reference-DOI: 10.1073/PNAS.1112081109

(-) Compounds

Molecule 1 - DIPEPTIDE EPIMERASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: EF_1511
    Organism Common: STREPTOCOCCUS FAECALIS
    Organism Scientific: ENTEROCOCCUS FAECALIS
    Organism Taxid: 226185
    Strain: V583
    Synonym: MANDELATE RACEMASE/MUCONATE LACTONIZING ENZYME FAMILY PROTEIN

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric Unit (3, 24)
No.NameCountTypeFull Name
1ARG8Mod. Amino AcidARGININE
2MG8Ligand/IonMAGNESIUM ION
3TYR8Mod. Amino AcidTYROSINE
Biological Unit 1 (2, 4)
No.NameCountTypeFull Name
1ARG2Mod. Amino AcidARGININE
2MG-1Ligand/IonMAGNESIUM ION
3TYR2Mod. Amino AcidTYROSINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ARG2Mod. Amino AcidARGININE
2MG-1Ligand/IonMAGNESIUM ION
3TYR2Mod. Amino AcidTYROSINE
Biological Unit 3 (2, 4)
No.NameCountTypeFull Name
1ARG2Mod. Amino AcidARGININE
2MG-1Ligand/IonMAGNESIUM ION
3TYR2Mod. Amino AcidTYROSINE
Biological Unit 4 (2, 4)
No.NameCountTypeFull Name
1ARG2Mod. Amino AcidARGININE
2MG-1Ligand/IonMAGNESIUM ION
3TYR2Mod. Amino AcidTYROSINE

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPHE A:19 , THR A:134 , LYS A:161 , CYS A:292 , ASP A:318 , ASP A:320 , TYR A:356 , HOH A:771 , HOH A:773BINDING SITE FOR RESIDUE ARG A 355
02AC2SOFTWAREPHE A:19 , ILE A:21 , PHE A:53 , ILE A:54 , LYS A:159 , LYS A:161 , ASP A:189 , ASN A:191 , GLU A:215 , ASP A:240 , LYS A:264 , CYS A:292 , ALA A:294 , GLU A:295 , ARG A:355 , MG A:357 , HOH A:385BINDING SITE FOR RESIDUE TYR A 356
03AC3SOFTWAREASP A:189 , GLU A:215 , ASP A:240 , TYR A:356 , HOH A:358BINDING SITE FOR RESIDUE MG A 357
04AC4SOFTWAREPHE B:19 , THR B:134 , LYS B:161 , CYS B:292 , ASP B:318 , ASP B:320 , TYR B:356 , HOH B:381 , HOH B:708BINDING SITE FOR RESIDUE ARG B 355
05AC5SOFTWAREILE B:21 , ILE B:26 , PHE B:53 , LYS B:159 , LYS B:161 , ASP B:189 , ASN B:191 , GLU B:215 , ASP B:240 , LYS B:264 , CYS B:292 , ALA B:294 , GLU B:295 , ARG B:355 , MG B:357 , HOH B:398BINDING SITE FOR RESIDUE TYR B 356
06AC6SOFTWAREASP B:189 , GLU B:215 , ASP B:240 , TYR B:356 , HOH B:358BINDING SITE FOR RESIDUE MG B 357
07AC7SOFTWAREPHE C:19 , THR C:134 , LYS C:161 , CYS C:292 , ASP C:318 , ASP C:320 , TYR C:356 , HOH C:516BINDING SITE FOR RESIDUE ARG C 355
08AC8SOFTWAREILE C:21 , PHE C:53 , LYS C:159 , LYS C:161 , ASP C:189 , ASN C:191 , ASP C:240 , LYS C:264 , CYS C:292 , ALA C:294 , GLU C:295 , ARG C:355 , MG C:357 , HOH C:376BINDING SITE FOR RESIDUE TYR C 356
09AC9SOFTWARELYS C:159 , ASP C:189 , GLU C:215 , ASP C:240 , TYR C:356 , HOH C:358BINDING SITE FOR RESIDUE MG C 357
10BC1SOFTWAREPHE D:19 , THR D:134 , LYS D:161 , CYS D:292 , ASP D:318 , ASP D:320 , TYR D:356BINDING SITE FOR RESIDUE ARG D 355
11BC2SOFTWAREILE D:21 , ILE D:26 , PHE D:53 , ILE D:54 , LYS D:159 , LYS D:161 , ASP D:189 , ASN D:191 , ASP D:240 , LYS D:264 , CYS D:292 , ALA D:294 , GLU D:295 , ARG D:355 , MG D:357 , HOH D:474 , HOH D:562BINDING SITE FOR RESIDUE TYR D 356
12BC3SOFTWARELYS D:159 , ASP D:189 , GLU D:215 , ASP D:240 , TYR D:356 , HOH D:367BINDING SITE FOR RESIDUE MG D 357
13BC4SOFTWAREPHE E:19 , THR E:134 , LYS E:161 , CYS E:292 , ALA E:294 , ASP E:318 , ASP E:320 , TYR E:356 , HOH E:546BINDING SITE FOR RESIDUE ARG E 355
14BC5SOFTWAREILE E:21 , PHE E:53 , LYS E:159 , LYS E:161 , ASP E:189 , ASN E:191 , ASP E:240 , LYS E:264 , CYS E:292 , ALA E:294 , GLU E:295 , ARG E:355 , MG E:357 , HOH E:386BINDING SITE FOR RESIDUE TYR E 356
15BC6SOFTWARELYS E:159 , ASP E:189 , GLU E:215 , ASP E:240 , TYR E:356 , HOH E:358BINDING SITE FOR RESIDUE MG E 357
16BC7SOFTWAREPHE F:19 , THR F:134 , LYS F:161 , CYS F:292 , ASP F:318 , ASP F:320 , TYR F:356BINDING SITE FOR RESIDUE ARG F 355
17BC8SOFTWAREILE F:21 , ILE F:26 , PHE F:53 , ILE F:54 , LYS F:159 , LYS F:161 , ASP F:189 , ASN F:191 , ASP F:240 , LYS F:264 , CYS F:292 , ALA F:294 , GLU F:295 , ARG F:355 , MG F:357 , HOH F:698 , HOH F:784BINDING SITE FOR RESIDUE TYR F 356
18BC9SOFTWARELYS F:159 , ASP F:189 , GLU F:215 , ASP F:240 , TYR F:356 , HOH F:439BINDING SITE FOR RESIDUE MG F 357
19CC1SOFTWARETHR G:134 , LYS G:161 , CYS G:292 , ASP G:318 , ASP G:320 , TYR G:356BINDING SITE FOR RESIDUE ARG G 355
20CC2SOFTWAREPHE G:19 , ILE G:21 , ILE G:26 , PHE G:53 , LYS G:159 , LYS G:161 , ASP G:189 , ASN G:191 , GLU G:215 , ASP G:240 , LYS G:264 , CYS G:292 , ALA G:294 , GLU G:295 , ARG G:355 , MG G:357 , HOH G:372BINDING SITE FOR RESIDUE TYR G 356
21CC3SOFTWAREASP G:189 , GLU G:215 , ASP G:240 , TYR G:356 , HOH G:358BINDING SITE FOR RESIDUE MG G 357
22CC4SOFTWAREPHE H:19 , THR H:134 , LYS H:161 , CYS H:292 , ASP H:318 , ASP H:320 , TYR H:356BINDING SITE FOR RESIDUE ARG H 355
23CC5SOFTWAREILE H:21 , ILE H:26 , PHE H:53 , LYS H:159 , LYS H:161 , ASP H:189 , ASN H:191 , GLU H:215 , ASP H:240 , LYS H:264 , CYS H:292 , ALA H:294 , GLU H:295 , ARG H:355 , MG H:357 , HOH H:412BINDING SITE FOR RESIDUE TYR H 356
24CC6SOFTWAREASP H:189 , GLU H:215 , ASP H:240 , TYR H:356 , HOH H:358BINDING SITE FOR RESIDUE MG H 357

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KUM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KUM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KUM)

(-) PROSITE Motifs  (1, 8)

Asymmetric Unit (1, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_2PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.HYEP_ENTFA186-217
 
 
 
 
 
 
 		  8A:186-217
B:186-217
C:186-217
D:186-217
E:186-217
F:186-217
G:186-217
H:186-217
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_2PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.HYEP_ENTFA186-217
 
 
 
 
 
 
 		  2A:186-217
B:186-217
-
-
-
-
-
-
Biological Unit 2 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_2PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.HYEP_ENTFA186-217
 
 
 
 
 
 
 		  2-
-
C:186-217
D:186-217
-
-
-
-
Biological Unit 3 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_2PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.HYEP_ENTFA186-217
 
 
 
 
 
 
 		  2-
-
-
-
E:186-217
F:186-217
-
-
Biological Unit 4 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1MR_MLE_2PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2.HYEP_ENTFA186-217
 
 
 
 
 
 
 		  2-
-
-
-
-
-
G:186-217
H:186-217

(-) Exons   (0, 0)

(no "Exon" information available for 3KUM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:356
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:356
                                                                                                                                                                                                                                                                                                                                                                                           354  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |  
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhh......eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh..eeee..hhhhhh.....ee........eee........ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: A:186-217        ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum A   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISHRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   || 
                                                                                                                                                                                                                                                                                                                                                                                           354| 
                                                                                                                                                                                                                                                                                                                                                                                            355 


Chain B from PDB  Type:PROTEIN  Length:355
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:355
                                                                                                                                                                                                                                                                                                                                                                                           354 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   | 
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee..hhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh..eeee..hhhhhh...............eee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: B:186-217        ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum B   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  || 
                                                                                                                                                                                                                                                                                                                                                                                          353| 
                                                                                                                                                                                                                                                                                                                                                                                           355 


Chain C from PDB  Type:PROTEIN  Length:356
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:356
                                                                                                                                                                                                                                                                                                                                                                                           354  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |  
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhh..eeee..hhhhhh.....ee........eee........ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: C:186-217        ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum C   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISHRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      


Chain D from PDB  Type:PROTEIN  Length:356
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:356
                                                                                                                                                                                                                                                                                                                                                                                           354  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |  
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh..eeee.............ee........eee........ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: D:186-217        ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum D   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISHRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      


Chain E from PDB  Type:PROTEIN  Length:356
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:356
                                                                                                                                                                                                                                                                                                                                                                                           354  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |  
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh.eeeee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhh.eeee......hhhhhhhhhhhhhhh..eeee..hhhhhh.....ee........eee........ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: E:186-217        ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum E   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISHRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      


Chain F from PDB  Type:PROTEIN  Length:356
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:356
                                                                                                                                                                                                                                                                                                                                                                                           354  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |  
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhh.....eee..eee...hhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh..eee......hhhhhhhhhhhh..eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh..eeee.............ee........eee........ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: F:186-217        ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum F   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISHRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      


Chain G from PDB  Type:PROTEIN  Length:356
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:356
                                                                                                                                                                                                                                                                                                                                                                                           354  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   |  
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH--   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhh......eee......hhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh..eeee..hhhhhh.....ee........eee........ee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: G:186-217        ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum G   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISHRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350      


Chain H from PDB  Type:PROTEIN  Length:355
 aligned with HYEP_ENTFA | Q834W6 from UniProtKB/Swiss-Prot  Length:354

    Alignment length:355
                                                                                                                                                                                                                                                                                                                                                                                           354 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350   | 
           HYEP_ENTFA     1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISH-   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeeee..eeeeeeeeeeeeeee....eeeeee..hhhhhh.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh.eeeee......hhhhhhhhhh....eeee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh..eeee..hhhhhh...............eee............ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MR_MLE_2  PDB: H:186-217        ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kum H   1 MKIKQVHVRASKIKLKETFTIALGTIESADSAIVEIETEEGLVGYGEGGPGIFITGETLAGTLETIELFGQAIIGLNPFNIEKIHEVMDKISAFAPAAKAAIDIACYDLMGQKAQLPLYQLLGGYDNQVITDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTGIEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADYQIELVEQPVKRRDLEGLKYVTSQVNTTIMADESCFDAQDALELVKKGTVDVINIKLMKCGGIHEALKINQICETAGIECMIGCMAEETTIGITAAAHLAAAQKNITRADLDATFGLETAPVTGGVSLEAKPLLELGEAAGLGISRY 356
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350  || 
                                                                                                                                                                                                                                                                                                                                                                                          353| 
                                                                                                                                                                                                                                                                                                                                                                                           355
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KUM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KUM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KUM)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (HYEP_ENTFA | Q834W6)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016854    racemase and epimerase activity    Catalysis of a reaction that alters the configuration of one or more chiral centers in a molecule.
biological process
    GO:0009063    cellular amino acid catabolic process    The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0006518    peptide metabolic process    The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another.

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  3kum
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HYEP_ENTFA | Q834W6: 3jva 3jw7 3jzu 3k1g

(-) Related Entries Specified in the PDB File

3jva THE SAME PROTEIN WITHOUT DIPEPTIDE