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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE PEPTIDE:N-GLYCOSIDASE F (PNGASE F) (YP_210507.1) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 2.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  20 Nov 09  (Deposition) - 15 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Putative Peptide:N-Glycosidase F (Pngase F), Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Peptide:N-Glycosidase F (Pngase F) (Yp_210507. 1) From Bacteroides Fragilis Nctc 934 At 2. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PUTATIVE PNGASE F
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BF0811
    Organism Scientific: BACTEROIDES FRAGILIS NCTC 9343
    Organism Taxid: 272559
    Strain: ATCC 25285 / NCTC 9343

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 63)

Asymmetric Unit (4, 63)
No.NameCountTypeFull Name
1CL10Ligand/IonCHLORIDE ION
2EDO22Ligand/Ion1,2-ETHANEDIOL
3IOD7Ligand/IonIODIDE ION
4MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 28)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3IOD4Ligand/IonIODIDE ION
4MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 25)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO10Ligand/Ion1,2-ETHANEDIOL
3IOD3Ligand/IonIODIDE ION
4MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (34, 34)

Asymmetric Unit (34, 34)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:41BINDING SITE FOR RESIDUE IOD A 6
02AC2SOFTWAREGLU A:134BINDING SITE FOR RESIDUE CL A 9
03AC3SOFTWAREARG A:97BINDING SITE FOR RESIDUE CL A 11
04AC4SOFTWAREARG A:97BINDING SITE FOR RESIDUE CL A 12
05AC5SOFTWAREEDO A:417BINDING SITE FOR RESIDUE EDO A 416
06AC6SOFTWAREEDO A:416BINDING SITE FOR RESIDUE EDO A 417
07AC7SOFTWAREGLU A:373 , EDO A:420BINDING SITE FOR RESIDUE EDO A 418
08AC8SOFTWARESER A:45 , PRO A:46 , ASP A:47 , SER A:214 , TRP C:212BINDING SITE FOR RESIDUE EDO A 419
09AC9SOFTWAREILE A:312 , PRO A:313 , TRP A:314 , ASN A:363 , GLU A:373 , EDO A:418BINDING SITE FOR RESIDUE EDO A 420
10BC1SOFTWAREASN A:363 , VAL A:371BINDING SITE FOR RESIDUE EDO A 421
11BC2SOFTWAREVAL A:330 , SER B:338BINDING SITE FOR RESIDUE IOD B 1
12BC3SOFTWAREARG B:97BINDING SITE FOR RESIDUE CL B 8
13BC4SOFTWAREASN B:167 , ASP B:168BINDING SITE FOR RESIDUE CL B 16
14BC5SOFTWARETHR B:379 , ASN D:39 , THR D:90 , ASN D:185 , LEU D:218 , ASN D:220BINDING SITE FOR RESIDUE EDO B 416
15BC6SOFTWARESER B:320 , ARG B:323BINDING SITE FOR RESIDUE EDO B 417
16BC7SOFTWAREASN B:363 , VAL B:371BINDING SITE FOR RESIDUE EDO B 418
17BC8SOFTWAREILE B:312 , PRO B:313 , TRP B:314 , ASN B:363 , GLU B:373BINDING SITE FOR RESIDUE EDO B 419
18BC9SOFTWARESER B:289 , EDO B:421 , HOH B:544BINDING SITE FOR RESIDUE EDO B 420
19CC1SOFTWAREEDO B:420BINDING SITE FOR RESIDUE EDO B 421
20CC2SOFTWARETHR C:268BINDING SITE FOR RESIDUE CL C 10
21CC3SOFTWAREARG C:97BINDING SITE FOR RESIDUE CL C 13
22CC4SOFTWARESER C:320 , ARG C:323 , SER D:320BINDING SITE FOR RESIDUE EDO C 416
23CC5SOFTWAREASN C:66 , HOH C:464BINDING SITE FOR RESIDUE EDO C 417
24CC6SOFTWAREASN A:185 , LEU A:218 , ASN A:220 , THR C:379BINDING SITE FOR RESIDUE EDO C 418
25CC7SOFTWAREASN C:39 , ASN C:185 , ASN C:220BINDING SITE FOR RESIDUE EDO C 419
26CC8SOFTWAREGLY A:161 , HIS A:162 , GLY C:272 , ALA C:273 , LEU C:380BINDING SITE FOR RESIDUE EDO C 420
27CC9SOFTWARESER D:338BINDING SITE FOR RESIDUE IOD D 3
28DC1SOFTWAREGLY D:329BINDING SITE FOR RESIDUE IOD D 7
29DC2SOFTWAREARG D:97BINDING SITE FOR RESIDUE CL D 17
30DC3SOFTWARELYS D:100 , ASP D:210 , TYR D:254BINDING SITE FOR RESIDUE EDO D 18
31DC4SOFTWARETRP D:98 , LYS D:100 , THR D:213 , HOH D:428BINDING SITE FOR RESIDUE EDO D 416
32DC5SOFTWARETRP B:212 , PHE D:44 , TRP D:212 , THR D:213 , SER D:214BINDING SITE FOR RESIDUE EDO D 417
33DC6SOFTWAREGLY D:287BINDING SITE FOR RESIDUE EDO D 418
34DC7SOFTWARELYS D:29 , PRO D:77 , GLU D:78BINDING SITE FOR RESIDUE EDO D 419

(-) SS Bonds  (5, 5)

Asymmetric Unit
No.Residues
1A:232 -B:232
2A:318 -A:365
3B:318 -B:365
4C:318 -C:365
5D:318 -D:365

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KS7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KS7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KS7)

(-) Exons   (0, 0)

(no "Exon" information available for 3KS7)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:391
 aligned with Q5LH31_BACFN | Q5LH31 from UniProtKB/TrEMBL  Length:415

    Alignment length:391
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414 
         Q5LH31_BACFN    25 NLPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLMNTVYYMGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeeeeeee...................eeehhh.eeeeeeee......eeeeeeeeeee.......eeeeee.......hhhhhhh........hhhhhh..............eeeeeee............hhhhh.............eeeeee.hhhhhhh.eeeeeeeee.......eeeeeeeeeee..........eeeeeeee..........hhhhh..eeeeeee....eeeeeeeeeeee.............eeeee..eeeeee.....hhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeeee.hhh.........ee..eeeeee....eeeeeeee.............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ks7 A  25 NLPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGmKFPSVDSLKLEKmVGIVPGKDYLPTVELmRFmTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLmNTVYYmGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
                                    34        44        54        64        74        84        94       104       114       124       134 |     144       154|      164       174       184       194       204       214       224       234       244     | 254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414 
                                                                                                                            123-MSE      136-MSE         152-MSE                                                                                     244-MSE |                                                                                                                                                                     
                                                                                                                                                            155-MSE                                                                                        250-MSE                                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:390
 aligned with Q5LH31_BACFN | Q5LH31 from UniProtKB/TrEMBL  Length:415

    Alignment length:390
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415
         Q5LH31_BACFN    26 LPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLMNTVYYMGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeeee..................eeeehhh.eeeeeee.......eeeeeeeeeee.......eeeeee.......hhhhhhhhh......hhhhhh..............eeeeeee...........hhhhhhhhh..........eeeeee...hhhhhh.eeeeeeee.......eeeeeeeeeee..........eeeeeeee..........hhhhh..eeeeeee....eeeeeeeeeeee.............eeeee..eeeeee.....hhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeeee.hhh.........ee..eeeeee....eeeeeeee.............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ks7 B  26 LPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGmKFPSVDSLKLEKmVGIVPGKDYLPTVELmRFmTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLmNTVYYmGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
                                    35        45        55        65        75        85        95       105       115       125       135|      145      |155       165       175       185       195       205       215       225       235       245    |  255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415
                                                                                                                           123-MSE      136-MSE         152-MSE                                                                                     244-MSE |                                                                                                                                                                     
                                                                                                                                                           155-MSE                                                                                        250-MSE                                                                                                                                                                 


Chain C from PDB  Type:PROTEIN  Length:390
 aligned with Q5LH31_BACFN | Q5LH31 from UniProtKB/TrEMBL  Length:415

    Alignment length:390
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415
         Q5LH31_BACFN    26 LPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLMNTVYYMGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eeeeeeeeeee...................eeehhh.eeeeeee.......eeeeeeeeeee.......eeeeee.......hhhhhhhhh......hhhhhh..............eeeeeee............hhhhh.............eeeeee...hhhhhh.eeeeeeee.......eeeeeeeeeee..........eeeeeeee..........hhhhh..eeeeeee....eeeeeeeeeeee.............eeeee..eeeeee.....hhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeeee.hhh.........ee..eeeeee....eeeeeeee.............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3ks7 C  26 LPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGmKFPSVDSLKLEKmVGIVPGKDYLPTVELmRFmTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLmNTVYYmGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
                                    35        45        55        65        75        85        95       105       115       125       135|      145      |155       165       175       185       195       205       215       225       235       245    |  255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415
                                                                                                                           123-MSE      136-MSE         152-MSE                                                                                     244-MSE |                                                                                                                                                                     
                                                                                                                                                           155-MSE                                                                                        250-MSE                                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:392
 aligned with Q5LH31_BACFN | Q5LH31 from UniProtKB/TrEMBL  Length:415

    Alignment length:392
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413  
         Q5LH31_BACFN    24 KNLPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGMKFPSVDSLKLEKMVGIVPGKDYLPTVELMRFMTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLMNTVYYMGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------N-glycanase_N-3ks7D05 D:33-225                                                                                                                                                                   --------------------------N-glycanase_C-3ks7D01 D:252-412                                                                                                                                  --- Pfam domains (1)
           Pfam domains (2) ---------N-glycanase_N-3ks7D06 D:33-225                                                                                                                                                                   --------------------------N-glycanase_C-3ks7D02 D:252-412                                                                                                                                  --- Pfam domains (2)
           Pfam domains (3) ---------N-glycanase_N-3ks7D07 D:33-225                                                                                                                                                                   --------------------------N-glycanase_C-3ks7D03 D:252-412                                                                                                                                  --- Pfam domains (3)
           Pfam domains (4) ---------N-glycanase_N-3ks7D08 D:33-225                                                                                                                                                                   --------------------------N-glycanase_C-3ks7D04 D:252-412                                                                                                                                  --- Pfam domains (4)
         Sec.struct. author ........eeeeeeeeeee..................eeeehhh.eeeeeeee......eeeeeeeeeee.......eeeeee.......hhhhhhhhh......hhhhhh..............eeeeeee..............hhhhhh..........eeeeee...hhhhhheeeeeeeee.......eeeeeeeeeee..........eeeeeeee..........hhhhh..eeeeeee....eeeeeeeeeeee.............eeeee..eeeeee.....hhhhhhhhh....eeeeeeeeeeee..eeeeeeeeeeee.hhh.........ee..eeeeee....eeeeeeee.............eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ks7 D  24 KNLPAKGDLHIPVFENVNVRFSPDTYPDNYNEADGTGVYHLVNGRIILKKITLPEYKRNVSVSLKVTLASNGDRWDKSGSCFVLPKSSAINLLTIARDGmKFPSVDSLKLEKmVGIVPGKDYLPTVELmRFmTPFGIGHYSNNNDSLSSKRRPVYIPKWESNVTWQQDITDLYPLLEGEAYVGIYIDTWTSEGYLVNADIDVKESRLACDVLPKRHVEPLmNTVYYmGQSYPDIFARRDVSTDFTVPKGAKNIRLKYIVTGHGGHSGGDEFVQKRNIISVDGKEVLNFIPWRDDCASFRRFNPATGVWLIKRLASYIGEKGYTEKEVEEPLASSDLSRSNWCPGSDVVPEEAVIGTLAPGKHTFTVSIPEAQAVDGNKLNHWLVSAYLVWEE 415
                                    33        43        53        63        73        83        93       103       113       123       133  |    143       153 |     163       173       183       193       203       213       223       233       243|     |253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413  
                                                                                                                             123-MSE      136-MSE         152-MSE                                                                                     244-MSE |                                                                                                                                                                     
                                                                                                                                                             155-MSE                                                                                        250-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KS7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KS7)

(-) Pfam Domains  (2, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: N-glycanase_C] (4)
(-)
Clan: no clan defined [family: N-glycanase_N] (4)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q5LH31_BACFN | Q5LH31)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016715    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from reduced ascorbate and one other donor, and one atom of oxygen is incorporated into one donor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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