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(-) Description

Title :  UBIQUITIN FOLD MODIFIER CONJUGATING ENZYME FROM LEISHMANIA MAJOR (PROBABLE)
 
Authors :  G. W. Han, I. Le Trong, E. A. Merritt, Structural Genomics Of Pathog Protozoa Consortium (Sgpp)
Date :  16 Nov 09  (Deposition) - 01 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Ubl Conjugation Pathway, Ligase, Structural Genomics, Psi, Structural Genomics Of Pathogenic Protozoa Consortium, Sgpp (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Merritt, I. Le Trong, G. W. Han, L. Anderson, A. Napuli, W. C. Van Voorhis, F. S. Buckner, E. Fan, F. Zucker, L. M. J. Verlinde, W. G. J. Hol
Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania Major (Probable)
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE UBIQUITIN FOLD MODIFIER CONJUGATING ENZYME
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET14B
    Expression System Strain: BL21 STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LMJF15.1250
    Mutation: YES
    Organism Scientific: LEISHMANIA MAJOR
    Organism Taxid: 5664

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3KPA)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KPA)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Tyr A:89 -Pro A:90
2Val A:128 -Pro A:129
3Tyr B:89 -Pro B:90
4Val B:128 -Pro B:129
5Tyr C:89 -Pro C:90
6Val C:128 -Pro C:129

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KPA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KPA)

(-) Exons   (0, 0)

(no "Exon" information available for 3KPA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:157
 aligned with Q4QF57_LEIMA | Q4QF57 from UniProtKB/TrEMBL  Length:171

    Alignment length:157
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       
         Q4QF57_LEIMA     4 SVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVLALGLGPWLSIEVPAIVEEGYLKP 160
               SCOP domains d3kpaa_ A: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....eeeeeeeeee..eeeeeeeeee.............hhhhh.....ee...ee....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kpa A   4 SVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEmNFDIPVTYPQAPPEIALPELEGKTVKmYRGGKICmTTHFFPLWARNVPYFGISHVLALGLGPWLSIEVPAmVEEGYLKP 160
                                    13        23        33        43        53        63        73       |83        93       103    |  113  |    123       133       143       153       
                                                                                                        81-MSE                    108-MSE 116-MSE                             152-MSE    


Chain B from PDB  Type:PROTEIN  Length:157
 aligned with Q4QF57_LEIMA | Q4QF57 from UniProtKB/TrEMBL  Length:171

    Alignment length:157
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       
         Q4QF57_LEIMA     4 SVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVLALGLGPWLSIEVPAIVEEGYLKP 160
               SCOP domains d3kpab_ B: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....eeeeeeeeee..eeeeeeeeee.............hhhhh................hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kpa B   4 SVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEmNFDIPVTYPQAPPEIALPELEGKTVKmYRGGKICmTTHFFPLWARNVPYFGISHVLALGLGPWLSIEVPAmVEEGYLKP 160
                                    13        23        33        43        53        63        73       |83        93       103    |  113  |    123       133       143       153       
                                                                                                        81-MSE                    108-MSE 116-MSE                             152-MSE    


Chain C from PDB  Type:PROTEIN  Length:157
 aligned with Q4QF57_LEIMA | Q4QF57 from UniProtKB/TrEMBL  Length:171

    Alignment length:157
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       
         Q4QF57_LEIMA     4 SVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGGKICMTTHFFPLWARNVPYFGISHVLALGLGPWLSIEVPAIVEEGYLKP 160
               SCOP domains d3kpac_ C: automated matches                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) UFC1-3kpaC01 C:4-160                                                                                                                                          Pfam domains (1)
           Pfam domains (2) UFC1-3kpaC02 C:4-160                                                                                                                                          Pfam domains (2)
           Pfam domains (3) UFC1-3kpaC03 C:4-160                                                                                                                                          Pfam domains (3)
         Sec.struct. author hhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....eeeeeeeeee..eeeeeeeeee.............hhhhh................hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kpa C   4 SVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEmNFDIPVTYPQAPPEIALPELEGKTVKmYRGGKICmTTHFFPLWARNVPYFGISHVLALGLGPWLSIEVPAmVEEGYLKP 160
                                    13        23        33        43        53        63        73       |83        93       103    |  113  |    123       133       143       153       
                                                                                                        81-MSE                    108-MSE 116-MSE                             152-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KPA)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: UBC (69)
(-)
Family: UFC1 (2)
(-)
Leishmania major (1)
1aUFC1-3kpaC01C:4-160
1bUFC1-3kpaC02C:4-160
1cUFC1-3kpaC03C:4-160

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3KPA)

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  Cis Peptide Bonds
    Tyr A:89 - Pro A:90   [ RasMol ]  
    Tyr B:89 - Pro B:90   [ RasMol ]  
    Tyr C:89 - Pro C:90   [ RasMol ]  
    Val A:128 - Pro A:129   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

2in1
2k07 RELATED ID: LMAJ001866AAA RELATED DB: TARGETDB
2z6o