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(-) Description

Title :  STRUCTURE OF FRUCTOFURANOSIDASE FROM SCHWANNIOMYCES OCCIDENTALIS COMPLEXED WITH FRUCTOSE
 
Authors :  J. Sanz-Aparicio, A. Polo
Date :  27 Oct 09  (Deposition) - 23 Feb 10  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Invertase, Gh32, Glycoprotein, Glycosidase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Alvaro-Benito, A. Polo, B. Gonzalez, M. Fernandez-Lobato, J. Sanz-Aparicio
Structural And Kinetic Analysis Of Schwanniomyces Occidentalis Invertase Reveals A New Oligomerization Patter And The Role Of Its Supplementary Domain In Substrate Binding
J. Biol. Chem. V. 285 13930 2010
PubMed-ID: 20181943  |  Reference-DOI: 10.1074/JBC.M109.095430

(-) Compounds

Molecule 1 - INVERTASE
    Chains: A, B
    EC Number: 3.2.1.26
    Organism Common: YEAST
    Organism Scientific: SCHWANNIOMYCES OCCIDENTALIS
    Organism Taxid: 27300

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1FRU2Ligand/IonFRUCTOSE
2NAG7Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:49 , ASP A:50 , GLN A:68 , TRP A:76 , LEU A:80 , PHE A:110 , SER A:111 , ARG A:178 , ASP A:179 , GLU A:230 , TRP A:314BINDING SITE FOR RESIDUE FRU A 600
2AC2SOFTWAREPRO A:71 , ASN A:72 , TYR A:81 , ILE A:98 , HOH A:888BINDING SITE FOR RESIDUE NAG A 1001
3AC3SOFTWARELYS A:197 , GLU A:200 , LYS A:202 , GLN A:204 , ASN A:219BINDING SITE FOR RESIDUE NAG A 3001
4AC4SOFTWAREHIS A:303 , ASN A:334 , HOH A:875 , HOH A:887 , HOH A:906BINDING SITE FOR RESIDUE NAG A 4001
5AC5SOFTWAREASN A:394 , TYR A:478 , HOH A:548 , HOH A:925BINDING SITE FOR RESIDUE NAG A 5001
6AC6SOFTWAREASN B:49 , ASP B:50 , GLN B:68 , TRP B:76 , LEU B:80 , PHE B:110 , SER B:111 , ARG B:178 , ASP B:179 , GLU B:230 , TRP B:314BINDING SITE FOR RESIDUE FRU B 600
7AC7SOFTWARELYS B:197 , GLU B:200 , LYS B:202 , GLN B:204 , ASN B:219 , HOH B:631 , HOH B:732BINDING SITE FOR RESIDUE NAG B 3001
8AC8SOFTWAREHIS B:303 , ASN B:334 , HOH B:544 , HOH B:620BINDING SITE FOR RESIDUE NAG B 4001
9AC9SOFTWAREASN B:394 , TYR B:478 , HOH B:633 , HOH B:659BINDING SITE FOR RESIDUE NAG B 5001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KF3)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Asn A:167 -Pro A:168
2Asn A:254 -Pro A:255
3Asn A:323 -Pro A:324
4Asn B:167 -Pro B:168
5Asn B:254 -Pro B:255
6Asn B:323 -Pro B:324

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KF3)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GLYCOSYL_HYDROL_F32PS00609 Glycosyl hydrolases family 32 active site.INV_SCHOC40-53
 		  2A:40-53
B:40-53

(-) Exons   (0, 0)

(no "Exon" information available for 3KF3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:509
 aligned with INV_SCHOC | P24133 from UniProtKB/Swiss-Prot  Length:533

    Alignment length:509
                                                                                                                                                                                                                                                                                                                                                        343                                                                                                                                                                                              
                                                                                                                                                                                                                                                                                                                                                     342  |                                                                                                                                                                                              
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336     | 344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524         
            INV_SCHOC    27 LSVDTSEYNRPLIHFTPEKGWMNDPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSNDLVHWDEHEIAIGPEHDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDLQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHERFKSMDHGCSEIARVKIQIFGSANLKNWVLNSNFSSGYYGNQYGMSRLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFDGFQFVPDDSQTRFVDIGKDFYAFQTFSEVEHGVLGLAWASNWQYADQVPTNPWRSSTSLARNYTLRYVIQ--MLKLTANIDKSVLPDSINVVDKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSSQSLFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLRVFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVIIRELNK 533
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.........eeeeeeeeeeee....eeeeeeeee..........eeeeeee......ee............eeeeeeeee.............hhhh.eeeeeeeee..eeeeeeeee.......ee..............eeeeeeee....eeeeeeeehhhheeeeeee......eeeeee........eeeeeeeeee......eeeeeeeee.........eeeeeeeee....eee.....ee.......eeeee.......eeeeee..............ee......eeeeeeeee.....eeeeeeeee......eeeeeeeeeeee......ee........eeeeeeeeee.....hhhh.eeeeeeee........eeeeeee....eeeee.........hhhhh..eeeee....eee..eeeeeeeeeee..eeeeee....eeeeee........eeeeeeee......eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------GLYCOSYL_HYDRO-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kf3 A  27 LSVDTSEYNRPLIHFTPEKGWMNDPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSNDLVHWDEHEIAIGPEHDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHEDSNQWIMVVSKSQEYKIQIFGSANLKNWVLNSNFSSGYYGNQYECPGLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFDGFQFVPDDSQTRFVDIGKDFYAFQTFSEVEHGVLGLAWASNWQYADQVPTNPWRSSTSLARNYTLRYVHTNAETKQLTLIQNPVLPDSINVVDKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSSQSSFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLRVFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVIIRELNK 535
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526         


Chain B from PDB  Type:PROTEIN  Length:509
 aligned with INV_SCHOC | P24133 from UniProtKB/Swiss-Prot  Length:533

    Alignment length:509
                                                                                                                                                                                                                                                                                                                                                        343                                                                                                                                                                                              
                                                                                                                                                                                                                                                                                                                                                     342  |                                                                                                                                                                                              
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336     | 344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524         
            INV_SCHOC    27 LSVDTSEYNRPLIHFTPEKGWMNDPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSNDLVHWDEHEIAIGPEHDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDLQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHERFKSMDHGCSEIARVKIQIFGSANLKNWVLNSNFSSGYYGNQYGMSRLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFDGFQFVPDDSQTRFVDIGKDFYAFQTFSEVEHGVLGLAWASNWQYADQVPTNPWRSSTSLARNYTLRYVIQ--MLKLTANIDKSVLPDSINVVDKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSSQSLFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLRVFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVIIRELNK 533
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhh.........eeeeeeeeeeee....eeeeeeeee..........eeeeeee......ee............eeeeeeeee.............hhhh.eeeeeeeee..eeeeeeeee.......ee..............eeeeeeee....eeeeeeeehhhheeeeeee......eeeeee........eeeeeeeeee......eeeeeeeee.........eeeeeeeee....eee.....ee.......eeeee.......eeeeee.....hhhhh....ee......eeeeeeeee.....eeeeeeeee......eeeeeeeeeeeee.....ee........eeeeeeeeee.....hhhh.eeeeeeee........eeeeeee....eeeee.........hhhhh..eeeee....eee..eeeeeeeeeee..eeeeee....eeeeee........eeeeeeee......eeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------GLYCOSYL_HYDRO-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kf3 B  27 LSVDTSEYNRPLIHFTPEKGWMNDPNGLFYDKTAKLWHLYFQYNPNATAWGQPLYWGHATSNDLVHWDEHEIAIGPEHDNEGIFSGSIVVDHNNTSGFFNSSIDPNQRIVAIYTNNIPDNQTQDIAFSLDGGYTFTKYENNPVIDVSSNQFRDPKVFWHEDSNQWIMVVSKSQEYKIQIFGSANLKNWVLNSNFSSGYYGNQYECPGLIEVPIENSDKSKWVMFLAINPGSPLGGSINQYFVGDFDGFQFVPDDSQTRFVDIGKDFYAFQTFSEVEHGVLGLAWASNWQYADQVPTNPWRSSTSLARNYTLRYVHTNAETKQLTLIQNPVLPDSINVVDKLKKKNVKLTNKKPIKTNFKGSTGLFDFNITFKVLNLNVSPGKTHFDILINSQELNSSVDSIKIGFDSSQSSFYIDRHIPNVEFPRKQFFTDKLAAYLEPLDYDQDLRVFSLYGIVDKNIIELYFNDGTVAMTNTFFMGEGKYPHDIQIVTDTEEPLFELESVIIRELNK 535
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KF3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KF3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KF3)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (INV_SCHOC | P24133)
molecular function
    GO:0004564    beta-fructofuranosidase activity    Catalysis of the reaction: a fructofuranosylated fructofuranosyl acceptor + H2O = a non fructofuranosylated fructofuranosyl acceptor + a beta-D-fructofuranoside.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0004553    hydrolase activity, hydrolyzing O-glycosyl compounds    Catalysis of the hydrolysis of any O-glycosyl bond.
    GO:0004575    sucrose alpha-glucosidase activity    Catalysis of the reaction: sucrose + H2O = alpha-D-glucose + beta-D-fructose.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  3kf3
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  INV_SCHOC | P24133
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  3.2.1.26
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        INV_SCHOC | P24133: 3kf5

(-) Related Entries Specified in the PDB File

3kf5 INVERTASE FROM SCHWANNIOMYCES OCCIDENTALIS