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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN LP_0118 FROM LACTOBACILLUS PLANTARUM,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET LPR91B
 
Authors :  J. Seetharaman, S. Lew, S. M. Vorobiev, D. Wang, H. Janjua, K. Cunningham, L. Owens, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  30 Sep 09  (Deposition) - 17 Nov 09  (Release) - 17 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  A  (1x)
Biol. Unit 4:  B  (1x)
Biol. Unit 5:  C  (1x)
Biol. Unit 6:  D  (1x)
Keywords :  Nucleic Acid Binding, Zinc Ion Binding, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Seetharaman, S. Lew, S. M. Vorobiev, D. Wang, H. Janjua, K. Cunningham, L. Owens, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of Protein Lp_0118 From Lactobacillus Plantarum, Northeast Structural Genomics Consortium Target Lpr91B
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN LP_0118
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: LP_0118
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D
Biological Unit 3 (1x): A   
Biological Unit 4 (1x):  B  
Biological Unit 5 (1x):   C 
Biological Unit 6 (1x):    D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3K2Y)

(-) Sites  (0, 0)

(no "Site" information available for 3K2Y)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K2Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K2Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K2Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K2Y)

(-) Exons   (0, 0)

(no "Exon" information available for 3K2Y)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with F9USU1_LACPL | F9USU1 from UniProtKB/TrEMBL  Length:530

    Alignment length:110
                                    69        79        89        99       109       119       129       139       149       159       169
         F9USU1_LACPL    60 GDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWRTTAVPSPIEA 169
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeehhhhhhhhhhhh.......eeeeee..........eeee.....eeeee...hhhhhhhhhhh..eeeeeeee........eeeeee-------ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3k2y A   2 GDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWR-------LEH 104
                                    11        21        31        41        51        61        71        81        91       101       104
                                                                                                                             101     102  


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with F9USU1_LACPL | F9USU1 from UniProtKB/TrEMBL  Length:530

    Alignment length:110
                                    68        78        88        98       108       118       128       138       148       158       168
         F9USU1_LACPL    59 TGDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWRTTAVPSPIE 168
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeehhhhh.hhhhhhh......eeeeee..........eeee.....eeeee.hhhhhhhhhhhhh..eeeeeeeeee....eeeeeeee-------e. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 3k2y B   1 TGDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWR-------LE 103
                                    10        20        30        40        50        60        70        80        90       100|      103
                                                                                                                              101     102 


Chain C from PDB  Type:PROTEIN  Length:102
 aligned with F9USU1_LACPL | F9USU1 from UniProtKB/TrEMBL  Length:530

    Alignment length:109
                                    69        79        89        99       109       119       129       139       149       159         
         F9USU1_LACPL    60 GDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWRTTAVPSPIE 168
               SCOP domains ------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeehhhhh.hhhhhh.......eeeeee..........eeeee....eeeee.hhhhhhhhhhhhh..eeeeeeeeee....eeeeeeee-------ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 3k2y C   2 GDAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWR-------LE 103
                                    11        21        31        41        51        61        71        81        91       101       | 
                                                                                                                             101     102 


Chain D from PDB  Type:PROTEIN  Length:101
 aligned with F9USU1_LACPL | F9USU1 from UniProtKB/TrEMBL  Length:530

    Alignment length:108
                                    70        80        90       100       110       120       130       140       150       160        
         F9USU1_LACPL    61 DAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWRTTAVPSPIE 168
               SCOP domains ------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeehhhhh.hhhhhhhh.....eeeeeee........eeeee.....eeeee...hhhhhhhhhhh...eeeeeeeee....eeeeeeee-------ee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 3k2y D   3 DAAVALDTVTVVGERYVDDIVATLTTLRVGMAVLLQRESGNQYDDNAISVWTLQHAKLGYIARYQNQPYATLMDQGQRLYGIVTVLDQQKQHLELMLWR-------LE 103
                                    12        22        32        42        52        62        72        82        92        |-      | 
                                                                                                                            101     102
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K2Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K2Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3K2Y)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (F9USU1_LACPL | F9USU1)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0016818    hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    Catalysis of the hydrolysis of any acid anhydride which contains phosphorus.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.

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