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(-) Description

Title :  CRYSTAL STRUCTURE OF A PREDICTED N6-ADENINE-SPECIFIC DNA METHYLASE FROM LISTERIA MONOCYTOGENES STR. 4B F2365
 
Authors :  B. Nocek, X. Xu, H. Cui, A. Savchenko, A. Edwards, A. Joachimiak, Midwes For Structural Genomics (Mcsg)
Date :  24 Sep 09  (Deposition) - 13 Oct 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Methylase, Pf01170, Putative Rna Methylase, Psi, Mcsg, Structural Genomics, Protein Structure Initiative, Midwest Center For Structural Genomics, Methyltransferase, Transferase, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Nocek, X. Xu, H. Cui, J. Ng, A. Savchenko, A. Edwards, A. Joachimiak
Crystal Structure Of A Predicted N6-Adenine-Specific Dna Methylase From Listeria Monocytogenes Str. 4B F2365
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PREDICTED N6-ADENINE-SPECIFIC DNA METHYLASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Strain: BL21MAGIC
    Expression System Taxid: 511693
    Gene: LMOF2365_1916
    Organism Scientific: LISTERIA MONOCYTOGENES STR. 4B
    Organism Taxid: 265669
    Strain: F2365

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 8)

Asymmetric/Biological Unit (3, 8)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
2GOL1Ligand/IonGLYCEROL
3MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:57 , GLY A:159 , HIS A:161 , LYS A:162 , HOH A:631 , HOH A:822 , HOH A:837BINDING SITE FOR RESIDUE EDO A 601
2AC2SOFTWARETHR A:9 , ASP A:56 , ARG A:57 , LYS A:59 , HOH A:531 , HOH A:564 , HOH A:848BINDING SITE FOR RESIDUE GOL A 701

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K0B)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K0B)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K0B)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K0B)

(-) Exons   (0, 0)

(no "Exon" information available for 3K0B)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:380
                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh...eeeeee....hhhhhhhhhhhh....eee..eeeeeehhhhhhhhhhhh.....eeeeeeeee..hhhhhhhhhhh.hhhhh........eeeeee.....hhhhhhhhhhhhhhhhhhhhh..............eeeeee..eeeeeee....................hhhhhhhhhhhh.......eee.....hhhhhhhhhhhh.........hhhhhh...hhhhhhhhhhhhhhhh.......eeeee.hhhhhhhhhhhhhhh......eeee.hhhhh.......eeee......hhhhhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhh....eeeee..eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k0b A -10 SSGRENLYFQGmKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSAIARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKSTLYSVPDCQAIVKKAIVNRVSEKYRRSGRLmETGALFKLEVSILKDEVTLTIDTSGAGLHKRGYRLAQGSAPIKETmAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWmPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREmGIVYKRmPTWSVYVLTSYELFEEVYGKKATKKRKLYRTDLYQYWGP 372
                                    -1 |       9        19        29        39        49        59        69        79        89        99       109       119       129  |    139       149       159       169       179       189       199       209       219       229 |     239       249       259       269       279       289       299       309       319   |   329|      339       349       359|      372
                                       1-MSE                                                                                                                            132-MSE                                       178-MSE                                              231-MSE                                                                                     323-MSE  |                          359|         
                                                                                                                                                                                                                                                                                                                                                                              330-MSE                       363
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K0B)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K0B)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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