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(-) Description

Title :  CRYSTAL STRUCTURE OF PROTEIN SMC04130 FROM SINORHIZOBIUM MELILOTI 1021
 
Authors :  Y. Patskovsky, R. Foti, U. Ramagopal, V. Malashkevich, R. Toro, J. Free S. Miller, J. M. Sauder, F. M. Raushel, S. K. Burley, S. C. Almo, New Yor Research Center For Structural Genomics (Nysgxrc)
Date :  14 Sep 09  (Deposition) - 22 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Psi-2, Tim Barrel Protein, Protein Structure Initiative, Zn Binding Domain, New York Sgx Research Center For Structural Genomics, Nysgxrc, Uncharacterized Protein, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Patskovsky, R. Foti, U. Ramagopal, V. Malashkevich, J. Freeman, S. Miller, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Protein Smc04130 From Sinorhizobium Meliloti
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN SMC04130
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: R00122, SMC04130
    Organism Common: SINORHIZOBIUM MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 382

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2ZN1Ligand/IonZINC ION
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREMET A:146 , TYR A:147 , ASP A:150 , ARG A:151 , PRO A:210 , THR A:211 , HOH A:442BINDING SITE FOR RESIDUE GOL A 283
2AC2SOFTWARETRP A:37 , ARG A:65 , ARG A:151 , HIS A:179 , ARG A:218 , PHE A:249 , HOH A:317BINDING SITE FOR RESIDUE GOL A 284
3AC3SOFTWAREGLU A:141 , ASP A:176 , HIS A:203 , GLU A:247 , HOH A:333BINDING SITE FOR RESIDUE ZN A 285
4AC4SOFTWAREASP A:227 , GLY A:230 , ARG A:234 , HOH A:311 , HOH A:312 , HOH A:323 , HOH A:466BINDING SITE FOR RESIDUE GOL A 286

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JU2)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Val A:209 -Pro A:210

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JU2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JU2)

(-) Exons   (0, 0)

(no "Exon" information available for 3JU2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
 aligned with Q92T58_RHIME | Q92T58 from UniProtKB/TrEMBL  Length:274

    Alignment length:275
                                                                                                                                                                                                                                                                                                          274  
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271  |  
         Q92T58_RHIME     2 QVEGLSINLATIREQCGFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTLGQALDICETLGPGVGVAIDVYHVWWDPDLANQIARAGKMKAILAHHICDWLVPTKDMLTDRGMMGDGVIDLKGIRRRIEAAGFHGAQEVEIFSADNWWKRPADEVIATCVERYRNCC--   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------AP_endonuc_2-3ju2A01 A:20-226                                                                                                                                                                                  -------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhhh...hhhhhhhhhhhh...eee.hhhhhhhhhhhhhhhhhhhh..ee..eeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhh..eee...hhhhh.......hhhhhhhhhhhhh..eeeeeehhhhh...hhhhhhhhhhhh..eeeeee......................hhhhhhhhhhhh.....eee......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ju2 A   2 QVEGLSINLATIREQCGFAEAVDICLKHGITAIAPWRDQVAAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTLGQALDICETLGPGVGVAIDVYHVWWDPDLANQIARAGKMKAILAHHICDWLVPTKDMLTDRGMMGDGVIDLKGIRRRIEAAGFHGAQEVEIFSADNWWKRPADEVIATCVERYRNCCEG 276
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JU2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JU2)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: TIM_barrel (694)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q92T58_RHIME | Q92T58)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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UniProtKB/TrEMBL
        Q92T58_RHIME | Q92T58: 3qc0

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