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(-)Asym./Biol. Unit
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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF TRPV1 ION CHANNEL IN COMPLEX WITH DKTX AND RTX DETERMINED BY SINGLE PARTICLE ELECTRON CRYO-MICROSCOPY
 
Authors :  M. Liao, E. Cao, D. Julius, Y. Cheng
Date :  28 Oct 13  (Deposition) - 04 Dec 13  (Release) - 18 Dec 13  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Trpv1 Channel, Dktx, Rtx, Transport Protein-Toxin Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  E. Cao, M. Liao, Y. Cheng, D. Julius
Trpv1 Structures In Distinct Conformations Reveal Activatio Mechanisms.
Nature V. 504 113 2013
PubMed-ID: 24305161  |  Reference-DOI: 10.1038/NATURE12823

(-) Compounds

Molecule 1 - TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL SUBFAMILY V MEMBER 1
    ChainsD, B, E, G
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293S GNTI
    Expression System CommonHUMAN
    Expression System PlasmidPFASTBAC1
    Expression System Taxid9606
    Expression System Vector TypePLASMID
    FragmentSEE REMARK 999
    GeneTRPV1, VR1, VR1L
    Organism CommonRAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymTRPV1, CAPSAICIN RECEPTOR, OSM-9-LIKE TRP CHANNEL 1, OTRPC1, VANILLOID RECEPTOR 1, VANILLOID RECEPTOR TYPE 1-LIKE
 
Molecule 2 - DOUBLE-KNOT TOXIN
    ChainsA, C, F, H
    FragmentSEE REMARK 999
    Organism CommonCHINESE EARTH TIGER TARANTULA
    Organism ScientificCHILOBRACHYS JINGZHAO
    Organism Taxid278060
    SynonymDKTX

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 168)

Asymmetric/Biological Unit (1, 168)
No.NameCountTypeFull Name
1UNK168Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 3J5Q)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J5Q)

(-) Cis Peptide Bonds  (36, 36)

Asymmetric/Biological Unit
No.Residues
1Lys D:240 -Gly D:241
2Arg D:242 -Pro D:243
3Asp D:383 -Leu D:384
4Val D:415 -Glu D:416
5Glu D:458 -Gly D:459
6Pro D:462 -Tyr D:463
7Asp D:509 -Ser D:510
8Unk D:760 -Unk D:761
9Lys B:240 -Gly B:241
10Arg B:242 -Pro B:243
11Asp B:383 -Leu B:384
12Val B:415 -Glu B:416
13Glu B:458 -Gly B:459
14Pro B:462 -Tyr B:463
15Asp B:509 -Ser B:510
16Unk B:760 -Unk B:761
17Lys E:240 -Gly E:241
18Arg E:242 -Pro E:243
19Asp E:383 -Leu E:384
20Val E:415 -Glu E:416
21Glu E:458 -Gly E:459
22Pro E:462 -Tyr E:463
23Asp E:509 -Ser E:510
24Unk E:760 -Unk E:761
25Lys G:240 -Gly G:241
26Arg G:242 -Pro G:243
27Asp G:383 -Leu G:384
28Val G:415 -Glu G:416
29Glu G:458 -Gly G:459
30Pro G:462 -Tyr G:463
31Asp G:509 -Ser G:510
32Unk G:760 -Unk G:761
33Unk A:13 -Unk A:14
34Unk C:13 -Unk C:14
35Unk F:13 -Unk F:14
36Unk H:13 -Unk H:14

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J5Q)

(-) PROSITE Motifs  (2, 8)

Asymmetric/Biological Unit (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ANK_REP_REGIONPS50297 Ankyrin repeat region circular profile.TRPV1_RAT200-355
 
 
 
  4B:200-355
D:200-355
E:200-355
G:200-355
2ANK_REPEATPS50088 Ankyrin repeat profile.TRPV1_RAT200-232
 
 
 
  4B:200-232
D:200-232
E:200-232
G:200-232

(-) Exons   (12, 48)

Asymmetric/Biological Unit (12, 48)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENSRNOT000000264931ENSRNOE00000189884chr10:60109656-6010970247TRPV1_RAT-00--
1.2ENSRNOT000000264932ENSRNOE00000189906chr10:60113571-60113887317TRPV1_RAT1-95950--
1.3ENSRNOT000000264933ENSRNOE00000189206chr10:60114528-60114691164TRPV1_RAT95-150564B:111-150
D:111-150
E:111-150
G:111-150
40
40
40
40
1.4ENSRNOT000000264934ENSRNOE00000189276chr10:60114768-60114920153TRPV1_RAT150-201524B:150-201
D:150-201
E:150-201
G:150-201
52
52
52
52
1.5ENSRNOT000000264935ENSRNOE00000189333chr10:60115485-60115625141TRPV1_RAT201-248484B:201-248
D:201-248
E:201-248
G:201-248
48
48
48
48
1.6ENSRNOT000000264936ENSRNOE00000189392chr10:60115727-60116025299TRPV1_RAT248-3471004B:248-347
D:248-347
E:248-347
G:248-347
100
100
100
100
1.7ENSRNOT000000264937ENSRNOE00000189985chr10:60116724-60116903180TRPV1_RAT348-407604B:348-407
D:348-407
E:348-407
G:348-407
60
60
60
60
1.8ENSRNOT000000264938ENSRNOE00000189447chr10:60119344-60119502159TRPV1_RAT408-460534B:408-460
D:408-460
E:408-460
G:408-460
53
53
53
53
1.9ENSRNOT000000264939ENSRNOE00000189477chr10:60121031-6012112696TRPV1_RAT461-492324B:461-492
D:461-492
E:461-492
G:461-492
32
32
32
32
1.10ENSRNOT0000002649310ENSRNOE00000268470chr10:60123512-6012358271TRPV1_RAT493-516244B:493-516 (gaps)
D:493-516 (gaps)
E:493-516 (gaps)
G:493-516 (gaps)
24
24
24
24
1.11ENSRNOT0000002649311ENSRNOE00000268462chr10:60125844-60126009166TRPV1_RAT516-571564B:516-571
D:516-571
E:516-571
G:516-571
56
56
56
56
1.12ENSRNOT0000002649312ENSRNOE00000268452chr10:60126415-6012648167TRPV1_RAT572-594234B:572-594
D:572-594
E:572-594
G:572-594
23
23
23
23
1.13ENSRNOT0000002649313ENSRNOE00000268443chr10:60127940-60128259320TRPV1_RAT594-7001074B:594-700 (gaps)
D:594-700 (gaps)
E:594-700 (gaps)
G:594-700 (gaps)
107
107
107
107
1.14ENSRNOT0000002649314ENSRNOE00000268434chr10:60129169-60129296128TRPV1_RAT701-743434B:701-762 (gaps)
D:701-762 (gaps)
E:701-762 (gaps)
G:701-762 (gaps)
31
31
31
31
1.15ENSRNOT0000002649315ENSRNOE00000268427chr10:60129747-60129862116TRPV1_RAT743-782400--
1.16ENSRNOT0000002649316ENSRNOE00000190023chr10:60134517-60134939423TRPV1_RAT782-838570--

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..................eee......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 3j5q A   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  31
                            ||||||||10||||||||20||||||||30|
                            ||||||||9-UNK|||18-UNK|||27-UNK
                            1-UNK|||10-UNK|||19-UNK|||28-UNK
                             2-UNK|| 11-UNK|| 20-UNK|| 29-UNK
                              3-UNK|  12-UNK|  21-UNK|  30-UNK
                               4-UNK   13-UNK   22-UNK   31-UNK
                                5-UNK   14-UNK   23-UNK    
                                 6-UNK   15-UNK   24-UNK   
                                  7-UNK   16-UNK   25-UNK  
                                   8-UNK   17-UNK   26-UNK 

Chain B from PDB  Type:PROTEIN  Length:592
 aligned with TRPV1_RAT | O35433 from UniProtKB/Swiss-Prot  Length:838

    Alignment length:621
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730 
            TRPV1_RAT   111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKNNSLPMESTPHKCRGSACKPGNSYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKAFRSGKLLQVGFT 731
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.......hhhhhhhhh.....hhhhh......hhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhh...........hhhhhhhhh.hhhhhhhhhhh.........hhhhh............hhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhh.hhhhhhhhhhh.....hhhhhh...........eeeee.hhhhhh...hhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...-----..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....-----------------------..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......-.eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------------------------------------------ANK_REPEAT  PDB: B:200-232       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------ANK_REP_REGION  PDB: B:200-355 UniProt: 200-355                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.3  PDB: B:111-150 UniProt: 95-150--------------------------------------------------Exon 1.5  PDB: B:201-248 UniProt: 201-248       ---------------------------------------------------------------------------------------------------Exon 1.7  PDB: B:348-407 UniProt: 348-407                   Exon 1.8  PDB: B:408-460 UniProt: 408-460            Exon 1.9  PDB: B:461-492        Exon 1.10               -------------------------------------------------------Exon 1.12              ----------------------------------------------------------------------------------------------------------Exon 1.14  PDB: B:701-762 (gaps Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------Exon 1.4  PDB: B:150-201 UniProt: 150-201           ----------------------------------------------Exon 1.6  PDB: B:248-347 UniProt: 248-347                                                           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: B:516-571 UniProt: 516-571              ----------------------Exon 1.13  PDB: B:594-700 (gaps) UniProt: 594-700                                                          ------------------------------- Transcript 1 (2)
                 3j5q B 111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPS-----VDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGK-----------------------YNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKA-xxxxxxxxxxx 762
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 |     510       520       530       540       550       560       570       580       590       600  |      -         -      |630       640       650       660       670       680       690       700       710        |-|||||||761|
                                                                                                                                                                                                                                                                                                                                                                                                                                 502   508                                                                                            603                     627                                                                                         719 ||||||760-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            752-UNK||761-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             753-UNK||762-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              754-UNK|   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               755-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                756-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 757-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  758-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   759-UNK

Chain C from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..................eee......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 3j5q C   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  31
                            ||||||||10||||||||20||||||||30|
                            ||||||||9-UNK|||18-UNK|||27-UNK
                            1-UNK|||10-UNK|||19-UNK|||28-UNK
                             2-UNK|| 11-UNK|| 20-UNK|| 29-UNK
                              3-UNK|  12-UNK|  21-UNK|  30-UNK
                               4-UNK   13-UNK   22-UNK   31-UNK
                                5-UNK   14-UNK   23-UNK    
                                 6-UNK   15-UNK   24-UNK   
                                  7-UNK   16-UNK   25-UNK  
                                   8-UNK   17-UNK   26-UNK 

Chain D from PDB  Type:PROTEIN  Length:592
 aligned with TRPV1_RAT | O35433 from UniProtKB/Swiss-Prot  Length:838

    Alignment length:621
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730 
            TRPV1_RAT   111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKNNSLPMESTPHKCRGSACKPGNSYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKAFRSGKLLQVGFT 731
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.......hhhhhhhhh.....hhhhh......hhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhh...........hhhhhhhhh.hhhhhhhhhhh.........hhhhh............hhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhh.hhhhhhhhhhh.....hhhhhh...........eeeee.hhhhhh...hhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...-----..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....-----------------------..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......-.eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------------------------------------------ANK_REPEAT  PDB: D:200-232       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------ANK_REP_REGION  PDB: D:200-355 UniProt: 200-355                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.3  PDB: D:111-150 UniProt: 95-150--------------------------------------------------Exon 1.5  PDB: D:201-248 UniProt: 201-248       ---------------------------------------------------------------------------------------------------Exon 1.7  PDB: D:348-407 UniProt: 348-407                   Exon 1.8  PDB: D:408-460 UniProt: 408-460            Exon 1.9  PDB: D:461-492        Exon 1.10               -------------------------------------------------------Exon 1.12              ----------------------------------------------------------------------------------------------------------Exon 1.14  PDB: D:701-762 (gaps Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------Exon 1.4  PDB: D:150-201 UniProt: 150-201           ----------------------------------------------Exon 1.6  PDB: D:248-347 UniProt: 248-347                                                           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: D:516-571 UniProt: 516-571              ----------------------Exon 1.13  PDB: D:594-700 (gaps) UniProt: 594-700                                                          ------------------------------- Transcript 1 (2)
                 3j5q D 111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPS-----VDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGK-----------------------YNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKA-xxxxxxxxxxx 762
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 |     510       520       530       540       550       560       570       580       590       600  |      -         -      |630       640       650       660       670       680       690       700       710        |-|||||||761|
                                                                                                                                                                                                                                                                                                                                                                                                                                 502   508                                                                                            603                     627                                                                                         719 ||||||760-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            752-UNK||761-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             753-UNK||762-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              754-UNK|   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               755-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                756-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 757-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  758-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   759-UNK

Chain E from PDB  Type:PROTEIN  Length:592
 aligned with TRPV1_RAT | O35433 from UniProtKB/Swiss-Prot  Length:838

    Alignment length:621
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730 
            TRPV1_RAT   111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKNNSLPMESTPHKCRGSACKPGNSYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKAFRSGKLLQVGFT 731
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.......hhhhhhhhh.....hhhhh......hhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhh...........hhhhhhhhh.hhhhhhhhhhh.........hhhhh............hhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhh.hhhhhhhhhhh.....hhhhhh...........eeeee.hhhhhh...hhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...-----..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....-----------------------..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......-.eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------------------------------------------ANK_REPEAT  PDB: E:200-232       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------ANK_REP_REGION  PDB: E:200-355 UniProt: 200-355                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.3  PDB: E:111-150 UniProt: 95-150--------------------------------------------------Exon 1.5  PDB: E:201-248 UniProt: 201-248       ---------------------------------------------------------------------------------------------------Exon 1.7  PDB: E:348-407 UniProt: 348-407                   Exon 1.8  PDB: E:408-460 UniProt: 408-460            Exon 1.9  PDB: E:461-492        Exon 1.10               -------------------------------------------------------Exon 1.12              ----------------------------------------------------------------------------------------------------------Exon 1.14  PDB: E:701-762 (gaps Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------Exon 1.4  PDB: E:150-201 UniProt: 150-201           ----------------------------------------------Exon 1.6  PDB: E:248-347 UniProt: 248-347                                                           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: E:516-571 UniProt: 516-571              ----------------------Exon 1.13  PDB: E:594-700 (gaps) UniProt: 594-700                                                          ------------------------------- Transcript 1 (2)
                 3j5q E 111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPS-----VDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGK-----------------------YNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKA-xxxxxxxxxxx 762
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Chain F from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..................eee......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 3j5q F   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  31
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Chain G from PDB  Type:PROTEIN  Length:592
 aligned with TRPV1_RAT | O35433 from UniProtKB/Swiss-Prot  Length:838

    Alignment length:621
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730 
            TRPV1_RAT   111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPSLKSLFVDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGKNNSLPMESTPHKCRGSACKPGNSYNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKAFRSGKLLQVGFT 731
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.......hhhhhhhhh.....hhhhh......hhhhhhhhh.....hhhhhhhhhhhhhh.hhhhhhh...........hhhhhhhhh.hhhhhhhhhhh.........hhhhh............hhhhhhhhh.hhhhhhhhhhh...............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhh.hhhhhhhhhhh.....hhhhhh...........eeeee.hhhhhh...hhhhhhhhhh....hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...-----..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....-----------------------..hhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......-.eeeee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------------------------------------------------------------------ANK_REPEAT  PDB: G:200-232       ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------ANK_REP_REGION  PDB: G:200-355 UniProt: 200-355                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.3  PDB: G:111-150 UniProt: 95-150--------------------------------------------------Exon 1.5  PDB: G:201-248 UniProt: 201-248       ---------------------------------------------------------------------------------------------------Exon 1.7  PDB: G:348-407 UniProt: 348-407                   Exon 1.8  PDB: G:408-460 UniProt: 408-460            Exon 1.9  PDB: G:461-492        Exon 1.10               -------------------------------------------------------Exon 1.12              ----------------------------------------------------------------------------------------------------------Exon 1.14  PDB: G:701-762 (gaps Transcript 1 (1)
           Transcript 1 (2) ---------------------------------------Exon 1.4  PDB: G:150-201 UniProt: 150-201           ----------------------------------------------Exon 1.6  PDB: G:248-347 UniProt: 248-347                                                           ------------------------------------------------------------------------------------------------------------------------------------------------------------------------Exon 1.11  PDB: G:516-571 UniProt: 516-571              ----------------------Exon 1.13  PDB: G:594-700 (gaps) UniProt: 594-700                                                          ------------------------------- Transcript 1 (2)
                 3j5q G 111 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHLSRKFTEWAYGPVHSSLYDLSCIDTCEKNSVLEVIAYSSSETPNRHDMLLVEPLNRLLQDKWDRFVKRIFYFNFFVYCLYMIIFTAAAYYRPVEGLPPYKLKNTVGDYFRVTGEILSVSGGVYFFFRGIQYFLQRRPS-----VDSYSEILFFVQSLFMLVSVVLYFSQRKEYVASMVFSLAMGWTNMLYYTRGFQQMGIYAVMIEKMILRDLCRFMFVYLVFLFGFSTAVVTLIEDGK-----------------------YNSLYSTCLELFKFTIGMGDLEFTENYDFKAVFIILLLAYVILTYILLLNMLIALMGETVNKIAQESKNIWKLQRAITILDTEKSFLKCMRKA-xxxxxxxxxxx 762
                                   120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500 |     510       520       530       540       550       560       570       580       590       600  |      -         -      |630       640       650       660       670       680       690       700       710        |-|||||||761|
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Chain H from PDB  Type:PROTEIN  Length:31
                                                               
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author ..................eee......eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                 3j5q H   1 xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx  31
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   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J5Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J5Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J5Q)

(-) Gene Ontology  (71, 71)

Asymmetric/Biological Unit(hide GO term definitions)
Chain B,D,E,G   (TRPV1_RAT | O35433)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0005262    calcium channel activity    Enables the facilitated diffusion of a calcium ion (by an energy-independent process) involving passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
    GO:0015278    calcium-release channel activity    Enables the transmembrane transfer of a calcium ion from intracellular stores by a channel that opens when a specific intracellular ligand has been bound by the channel complex or one of its constituent parts.
    GO:0005516    calmodulin binding    Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
    GO:0005261    cation channel activity    Enables the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
    GO:0008324    cation transmembrane transporter activity    Enables the transfer of cation from one side of the membrane to the other.
    GO:0017081    chloride channel regulator activity    Modulates the activity of a chloride channel.
    GO:0005231    excitatory extracellular ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific extracellular ligand has been bound by the channel complex or one of its constituent parts, where channel opening contributes to an increase in membrane potential.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005216    ion channel activity    Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
    GO:0015276    ligand-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0097603    temperature-gated ion channel activity    Enables the transmembrane transfer of an ion by a channel that opens in response to a temperature stimulus (e.g. exposure to a temperature range different than the optimal temperature for that organism).
    GO:0004888    transmembrane signaling receptor activity    Combining with an extracellular or intracellular signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity or state as part of signal transduction.
biological process
    GO:0048266    behavioral response to pain    Any process that results in a change in the behavior of an organism as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
    GO:0070588    calcium ion transmembrane transport    A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006816    calcium ion transport    The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0071318    cellular response to ATP    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus.
    GO:0071312    cellular response to alkaloid    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alkaloid stimulus. Alkaloids are a large group of nitrogenous substances found in naturally in plants, many of which have extracts that are pharmacologically active.
    GO:0071345    cellular response to cytokine stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus.
    GO:0071363    cellular response to growth factor stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
    GO:1990090    cellular response to nerve growth factor stimulus    A process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nerve growth factor stimulus.
    GO:0071502    cellular response to temperature stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
    GO:0071356    cellular response to tumor necrosis factor    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a tumor necrosis factor stimulus.
    GO:0050968    detection of chemical stimulus involved in sensory perception of pain    The series of events involved in the perception of pain in which a chemical stimulus is received and converted into a molecular signal.
    GO:0050965    detection of temperature stimulus involved in sensory perception of pain    The series of events involved in the perception of pain in which a temperature stimulus is received and converted into a molecular signal.
    GO:0050960    detection of temperature stimulus involved in thermoception    The series of events in which a temperature stimulus is received and converted into a molecular signal as part of thermoception.
    GO:0002024    diet induced thermogenesis    The process that results in increased metabolic rate in tissues of an organism. It is triggered by the detection of dietary excess. This process is achieved via signalling in the sympathetic nervous system.
    GO:0001660    fever generation    The heat generation process that results in a rise in body temperature above the normal, often as a response to infection.
    GO:0014047    glutamate secretion    The controlled release of glutamate by a cell. The glutamate is the most abundant excitatory neurotransmitter in the nervous system.
    GO:0006954    inflammatory response    The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages.
    GO:0034220    ion transmembrane transport    A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
    GO:0006811    ion transport    The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006629    lipid metabolic process    The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
    GO:0001774    microglial cell activation    The change in morphology and behavior of a microglial cell resulting from exposure to a cytokine, chemokine, cellular ligand, or soluble factor.
    GO:0090212    negative regulation of establishment of blood-brain barrier    Any process that decreases the rate, frequency or extent of the establishment of the blood-brain barrier, a selectively permeable structural and functional barrier that exists between the capillaries and the brain.
    GO:0000122    negative regulation of transcription from RNA polymerase II promoter    Any process that stops, prevents, or reduces the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0002790    peptide secretion    The controlled release of a peptide from a cell or a tissue.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0007204    positive regulation of cytosolic calcium ion concentration    Any process that increases the concentration of calcium ions in the cytosol.
    GO:0060454    positive regulation of gastric acid secretion    Any process that increases the rate frequency or extent of gastric secretion. Gastric secretion is the regulated release of gastric acid (hydrochloric acid) by parietal or oxyntic cells during digestion.
    GO:0045429    positive regulation of nitric oxide biosynthetic process    Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nitric oxide.
    GO:0051209    release of sequestered calcium ion into cytosol    The process in which calcium ions sequestered in the endoplasmic reticulum, Golgi apparatus or mitochondria are released into the cytosolic compartment.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0010243    response to organonitrogen compound    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organonitrogen stimulus. An organonitrogen compound is formally a compound containing at least one carbon-nitrogen bond.
    GO:0009268    response to pH    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution.
    GO:0048265    response to pain    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pain stimulus. Pain stimuli cause activation of nociceptors, peripheral receptors for pain, include receptors which are sensitive to painful mechanical stimuli, extreme heat or cold, and chemical stimuli.
    GO:0043434    response to peptide hormone    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a peptide hormone stimulus. A peptide hormone is any of a class of peptides that are secreted into the blood stream and have endocrine functions in living animals.
    GO:0050954    sensory perception of mechanical stimulus    The series of events required for an organism to receive a sensory mechanical stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
    GO:0019233    sensory perception of pain    The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0060083    smooth muscle contraction involved in micturition    The process leading to shortening and/or development of tension in the urinary bladder smooth muscle tissue involved in the expulsion urine from the body.
    GO:0001659    temperature homeostasis    A homeostatic process in which an organism modulates its internal body temperature.
    GO:0055085    transmembrane transport    The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0014832    urinary bladder smooth muscle contraction    A process in which force is generated within smooth muscle tissue, resulting in a change in muscle geometry. This process occurs in the urinary bladder. Force generation involves a chemo-mechanical energy conversion step that is carried out by the actin/myosin complex activity, which generates force through ATP hydrolysis. The urinary bladder is a musculomembranous sac along the urinary tract.
cellular component
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0030425    dendrite    A neuron projection that has a short, tapering, often branched, morphology, receives and integrates signals from other neurons or from sensory stimuli, and conducts a nerve impulse towards the axon or the cell body. In most neurons, the impulse is conveyed from dendrites to axon via the cell body, but in some types of unipolar neuron, the impulse does not travel via the cell body.
    GO:0032591    dendritic spine membrane    The portion of the plasma membrane surrounding a dendritic spine.
    GO:0009897    external side of plasma membrane    The leaflet of the plasma membrane that faces away from the cytoplasm and any proteins embedded or anchored in it or attached to its surface.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0031226    intrinsic component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having either part of their peptide sequence embedded in the hydrophobic region of the membrane or some other covalently attached group such as a GPI anchor that is similarly embedded in the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0043025    neuronal cell body    The portion of a neuron that includes the nucleus, but excludes cell projections such as axons and dendrites.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0045211    postsynaptic membrane    A specialized area of membrane facing the presynaptic membrane on the tip of the nerve ending and separated from it by a minute cleft (the synaptic cleft). Neurotransmitters cross the synaptic cleft and transmit the signal to the postsynaptic membrane.
    GO:0045202    synapse    The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        TRPV1_RAT | O354332nyj 2pnn 3j5p 3j5r 3j9j 3sui 5irx 5irz 5is0

(-) Related Entries Specified in the PDB File

3j5p 3j5r