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(-) Description

Title :  FILAMENTS FROM IGNICOCCUS HOSPITALIS SHOW DIVERSITY OF PACKING IN PROTEINS CONTAINING N-TERMINAL TYPE IV PILIN HELICES
 
Authors :  X. Yu, C. Goforth, C. Meyer, R. Rachel, R. Wirth, G. F. Schroeder, E. H. Eg
Date :  18 May 12  (Deposition) - 20 Jun 12  (Release) - 29 Aug 12  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  7.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U
Keywords :  Helical Polymer, Flagellar Filament, Cell Adhesion, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Yu, C. Goforth, C. Meyer, R. Rachel, R. Wirth, G. F. Schroder, E. H. Egelman
Filaments From Ignicoccus Hospitalis Show Diversity Of Packing In Proteins Containing N-Terminal Type Iv Pilin Helices.
J. Mol. Biol. V. 422 274 2012
PubMed-ID: 22659006  |  Reference-DOI: 10.1016/J.JMB.2012.05.031

(-) Compounds

Molecule 1 - ARCHAEAL ADHESION FILAMENT CORE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U
    Fragment: SEE REMARK 999
    Organism Scientific: IGNICOCCUS HOSPITALIS
    Organism Taxid: 160233

 Structural Features

(-) Chains, Units

  123456789101112131415161718192021
Asymmetric/Biological Unit : ABCDEFGHIJKLMNOPQRSTU

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3J1R)

(-) Sites  (0, 0)

(no "Site" information available for 3J1R)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J1R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3J1R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J1R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J1R)

(-) Exons   (0, 0)

(no "Exon" information available for 3J1R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r A  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain B from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r B  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain C from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r C  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain D from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r D  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain E from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r E  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain F from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r F  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain G from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r G  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain H from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r H  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain I from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r I  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain J from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r J  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain K from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r K  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain L from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r L  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain M from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r M  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain N from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r N  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain O from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r O  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain P from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r P  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain Q from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r Q  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain R from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r R  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain S from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r S  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain T from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r T  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27      


Chain U from PDB  Type:PROTEIN  Length:26
 aligned with A8AAA0_IGNH4 | A8AAA0 from UniProtKB/TrEMBL  Length:310

    Alignment length:26
                                    17        27      
          A8AAA0_IGNH4    8 VSPVIATLLLILIAVAAAVLLYTWVS 33
               SCOP domains -------------------------- SCOP domains
               CATH domains -------------------------- CATH domains
               Pfam domains -------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------- SAPs(SNPs)
                    PROSITE -------------------------- PROSITE
                 Transcript -------------------------- Transcript
                  3j1r U  8 VSPVIATLLLILIAVAAAVLLYTWVS 33
                                    17        27
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J1R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J1R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J1R)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U   (A8AAA0_IGNH4 | A8AAA0)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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(no "Cis Peptide Bonds" information available for 3j1r)
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A8AAA0_IGNH4 | A8AAA0: 5kyh

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3J1R)