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(-) Description

Title :  ADP COMPLEX OF C.THERM. GET3 IN CLOSED FORM
 
Authors :  G. Bozkurt, K. Wild, I. Sinning
Date :  21 Aug 09  (Deposition) - 15 Dec 09  (Release) - 29 Dec 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Targeting, Atpase, Tail-Anchored Protein, Zn Binding, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Bozkurt, G. Stjepanovic, F. Vilardi, S. Amlacher, K. Wild, G. Bange, V. Favaloro, K. Rippe, E. Hurt, B. Dobberstein, I. Sinning
Structural Insights Into Tail-Anchored Protein Binding And Membrane Insertion By Get3.
Proc. Natl. Acad. Sci. Usa V. 106 21131 2009
PubMed-ID: 19948960  |  Reference-DOI: 10.1073/PNAS.0910223106
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TAIL-ANCHORED PROTEIN TARGETING FACTOR GET3
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET24D
    Expression System Strain: ROSETTA (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GET3
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1ADP2Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3ZN1Ligand/IonZINC ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:37 , VAL A:38 , GLY A:39 , LYS A:40 , THR A:41 , THR A:42 , ASN A:270 , PRO A:312 , LEU A:313 , LEU A:314 , GLU A:316 , GLU A:317 , VAL A:318 , PHE A:327 , MG A:346 , LYS B:35 , GLU B:243 , LEU B:245BINDING SITE FOR RESIDUE ADP A 1
2AC2SOFTWARELYS A:35 , GLU A:243 , LEU A:245 , MG B:2 , GLY B:37 , VAL B:38 , GLY B:39 , LYS B:40 , THR B:41 , THR B:42 , ASN B:270 , PRO B:312 , LEU B:313 , LEU B:314 , GLU B:316 , GLU B:317 , VAL B:318 , PHE B:327BINDING SITE FOR RESIDUE ADP B 1
3AC3SOFTWAREADP A:1 , THR A:41BINDING SITE FOR RESIDUE MG A 346
4AC4SOFTWAREADP B:1 , THR B:41BINDING SITE FOR RESIDUE MG B 2
5AC5SOFTWARECYS A:281 , CYS A:284 , CYS B:281 , CYS B:284BINDING SITE FOR RESIDUE ZN A 3

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IQX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3IQX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IQX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IQX)

(-) Exons   (0, 0)

(no "Exon" information available for 3IQX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
 aligned with D2YW44_9PEZI | D2YW44 from UniProtKB/TrEMBL  Length:334

    Alignment length:326
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321      
         D2YW44_9PEZI     2 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVPP 327
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh....eeeee.....hhhhhhhhhhhhhhhhh..eeeee....hhhhhhhh...............eeeee...------------------------------..hhhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhhhhhh-----------------------------------....hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh...eeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iqx A  13 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDP------------------------------AIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVL-----------------------------------DVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVPP 338
                                    22        32        42        52        62        72        82        92    |    -         -         -     | 132       142       152       162       172|        -         -         -      |212       222       232       242       252       262       272       282       292       302       312       322       332      
                                                                                                               97                            128                                          173                                 209                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:255
 aligned with D2YW44_9PEZI | D2YW44 from UniProtKB/TrEMBL  Length:334

    Alignment length:325
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321     
         D2YW44_9PEZI     2 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVP 326
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh....eeeee.....hhhhhhhhhhhhhhhhh..eeeee.....hhhhhhh...............eeeee...----------------------------------..hhhhhhhhhhhhhh....eeeee..hhhhhhhhhhhhhhhh------------------------------------hhhhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhh..eeeeeeeeee........hhhhhhhhhhhhhhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iqx B  13 SMEPTLQSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTDPAHNLSDAFSQKFGKEARLVEGFDNLYAMEIDP----------------------------------IDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRFLQFPTVLE------------------------------------MEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLFPKPGSDCEQCTARRRMQKKYLDQIEELYDEEFNVVKMPLLVEEVRGKERLEKFSEMLIKPFVP 337
                                    22        32        42        52        62        72        82        92    |    -         -         -       132       142       152       162       172 |       -         -         -       212       222       232       242       252       262       272       282       292       302       312       322       332     
                                                                                                               97                                132                                       174                                  211
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3IQX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IQX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IQX)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (D2YW44_9PEZI | D2YW44)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0045048    protein insertion into ER membrane    The process that results in incorporation of a protein into an endoplasmic reticulum (ER) membrane. It depends on specific topogenic sequences of amino acids that ensure that a protein acquires the proper orientation during its insertion into the ER membrane.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        D2YW44_9PEZI | D2YW44: 3iqw

(-) Related Entries Specified in the PDB File

3iqw AMPPNP COMPLEX OF C. THERM. GET3