3II0 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN GLUTAMATE OXALOACETATE TRANSAMINASE 1 (GOT1)

Authors :   E. Ugochukwu, E. Pilka, C. Cooper, J. E. Bray, W. W. Yue, J. Muniz, A. Chai F. Von Delft, C. Bountra, C. H. Arrowsmith, J. Weigelt, A. Edwards, K. L. Kavanagh, U. Oppermann, Structural Genomics Consortium (Sg

Date :   31 Jul 09 (Deposition) - 11 Aug 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,D  (1x)
Biol. Unit 6: B,C  (1x)

Keywords :   Glutamate Oxaloacetate Transaminase 1, Aspartate Aminotransferase 1, Pyridoxal Phosphate-Dependent Enzyme, Amino Acid Metabolism, Urea And Tricarboxylic Acid Cycles, Structural Genomics, Structural Genomics Consortium, Sgc, Aminotransferase, Phosphoprotein, Pyridoxal Phosphate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Ugochukwu, E. Pilka, C. Cooper, J. E. Bray, W. W. Yue, J. Muniz, A. Chaikuad, K. L. Kavanagh, U. Oppermann
Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1)
To Be Published
PubMed: search

Molecule 1 - ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC
	Chains	:	A, B, C, D
	EC Number	:	2.6.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PNIC-CTHF
	Expression System Strain	:	BL21(DE3)-R3-PRARE2
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 14-412
	Gene	:	GOT1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	TRANSAMINASE A, GLUTAMATE OXALOACETATE TRANSAMINASE 1

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A			D
Biological Unit 6 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 21)

No.	Name	Count	Type	Full Name
1	EDO	13	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	4	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	4	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	1	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	1	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 3 (3, 6)

No.	Name	Count	Type	Full Name
1	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	1	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 4 (3, 5)

No.	Name	Count	Type	Full Name
1	EDO	3	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	1	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	1	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 5 (3, 10)

No.	Name	Count	Type	Full Name
1	EDO	6	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	2	Ligand/Ion	D(-)-TARTARIC ACID

Biological Unit 6 (3, 11)

No.	Name	Count	Type	Full Name
1	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
2	PLP	2	Ligand/Ion	PYRIDOXAL-5'-PHOSPHATE
3	TAR	2	Ligand/Ion	D(-)-TARTARIC ACID

Asymmetric Unit (21, 21)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:108 , GLY A:109 , THR A:110 , TRP A:141 , ASN A:195 , ASP A:223 , ALA A:225 , TYR A:226 , SER A:256 , SER A:258 , LYS A:259 , ARG A:267 , TAR A:435 , HOH A:445 , TYR D:71	BINDING SITE FOR RESIDUE PLP A 1
02	AC2	SOFTWARE	PLP A:1 , VAL A:18 , PHE A:19 , VAL A:38 , GLY A:39 , TRP A:141 , ASN A:195 , TYR A:226 , LYS A:259 , PHE A:361 , ARG A:387 , HOH A:445 , HOH A:548 , TYR D:71 , ARG D:293	BINDING SITE FOR RESIDUE TAR A 435
03	AC3	SOFTWARE	ASN A:128 , LYS A:130 , HOH A:438 , EDO C:7	BINDING SITE FOR RESIDUE EDO A 3
04	AC4	SOFTWARE	TYR A:41 , THR A:43 , TRP A:49 , HOH A:455 , HOH A:500	BINDING SITE FOR RESIDUE EDO A 11
05	AC5	SOFTWARE	ALA A:78 , ARG A:81 , SER A:82 , SER A:85 , GLY A:102 , GLY A:103 , HOH A:475	BINDING SITE FOR RESIDUE EDO A 436
06	AC6	SOFTWARE	GLY B:108 , GLY B:109 , THR B:110 , TRP B:141 , ASN B:195 , ASP B:223 , ALA B:225 , TYR B:226 , SER B:256 , SER B:258 , LYS B:259 , ARG B:267 , TAR B:435 , HOH B:483 , TYR C:71	BINDING SITE FOR RESIDUE PLP B 2
07	AC7	SOFTWARE	PLP B:2 , VAL B:18 , PHE B:19 , VAL B:38 , GLY B:39 , TRP B:141 , ASN B:195 , TYR B:226 , LYS B:259 , ARG B:387 , HOH B:483 , HOH B:576 , TYR C:71 , ARG C:293	BINDING SITE FOR RESIDUE TAR B 435
08	AC8	SOFTWARE	TYR B:41 , THR B:43 , TRP B:49 , HOH B:551	BINDING SITE FOR RESIDUE EDO B 1
09	AC9	SOFTWARE	ASN B:128 , LYS B:130 , HOH B:470 , EDO D:6	BINDING SITE FOR RESIDUE EDO B 10
10	BC1	SOFTWARE	ALA B:78 , ARG B:81 , SER B:82 , GLY B:103 , HOH B:510 , HOH B:696	BINDING SITE FOR RESIDUE EDO B 436
11	BC2	SOFTWARE	TYR B:71 , HOH B:462 , GLY C:108 , GLY C:109 , THR C:110 , TRP C:141 , ASN C:195 , ASP C:223 , TYR C:226 , SER C:256 , SER C:258 , LYS C:259 , ARG C:267 , TAR C:435	BINDING SITE FOR RESIDUE PLP C 3
12	BC3	SOFTWARE	TYR B:71 , ARG B:293 , HOH B:462 , PLP C:3 , VAL C:18 , PHE C:19 , VAL C:38 , GLY C:39 , TRP C:141 , ASN C:195 , TYR C:226 , LYS C:259 , PHE C:361 , ARG C:387 , HOH C:527	BINDING SITE FOR RESIDUE TAR C 435
13	BC4	SOFTWARE	LEU A:416 , TYR C:124 , ASN C:125	BINDING SITE FOR RESIDUE EDO C 5
14	BC5	SOFTWARE	EDO A:3 , ARG C:157 , SER C:158	BINDING SITE FOR RESIDUE EDO C 7
15	BC6	SOFTWARE	TYR C:41 , THR C:326 , HOH C:704	BINDING SITE FOR RESIDUE EDO C 12
16	BC7	SOFTWARE	ARG C:81 , GLY C:103 , HOH C:467 , HOH C:468	BINDING SITE FOR RESIDUE EDO C 436
17	BC8	SOFTWARE	TYR A:71 , HOH A:458 , GLY D:108 , GLY D:109 , THR D:110 , TRP D:141 , ASN D:195 , ASP D:223 , TYR D:226 , SER D:256 , SER D:258 , LYS D:259 , ARG D:267 , TAR D:435	BINDING SITE FOR RESIDUE PLP D 4
18	BC9	SOFTWARE	TYR A:71 , ARG A:293 , HOH A:458 , PLP D:4 , VAL D:18 , PHE D:19 , GLY D:39 , TRP D:141 , ASN D:195 , TYR D:226 , LYS D:259 , PHE D:361 , ARG D:387 , HOH D:521	BINDING SITE FOR RESIDUE TAR D 435
19	CC1	SOFTWARE	EDO B:10 , ARG D:157 , SER D:158	BINDING SITE FOR RESIDUE EDO D 6
20	CC2	SOFTWARE	TYR D:41 , THR D:43 , TRP D:49 , HOH D:497	BINDING SITE FOR RESIDUE EDO D 8
21	CC3	SOFTWARE	ARG D:81 , SER D:85 , VAL D:101 , HOH D:535 , HOH D:551	BINDING SITE FOR RESIDUE EDO D 9

(no "SS Bond" information available for 3II0)

Asymmetric Unit

No.	Residues
1	Ser A:138	-	Pro A:139
2	Asn A:195	-	Pro A:196
3	Ser B:138	-	Pro B:139
4	Asn B:195	-	Pro B:196
5	Gln C:14	-	Pro C:15
6	Ser C:138	-	Pro C:139
7	Asn C:195	-	Pro C:196
8	Gln D:14	-	Pro D:15
9	Ser D:138	-	Pro D:139
10	Asn D:195	-	Pro D:196

(no "SAP(SNP)/Variant" information available for 3II0)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	4	A:256-269 B:256-269 C:256-269 D:256-269

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	1	A:256-269 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	1	- B:256-269 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	1	- - C:256-269 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	1	- - - D:256-269

Biological Unit 5 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	2	A:256-269 - - D:256-269

Biological Unit 6 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	AA_TRANSFER_CLASS_1	PS00105	Aminotransferases class-I pyridoxal-phosphate attachment site.	AATC_HUMAN	256-269	2	- B:256-269 C:256-269 -

(no "Exon" information available for 3II0)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:405
 aligned with AATC_HUMAN | P17174 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                        413      
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404        |-     
           AATC_HUMAN    15 PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ------   -
               SCOP domains d3ii0a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -3ii0A01 A:16-49,A:329-411         3ii0A02 A:50-328 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                                   3ii0A01 A:16-49,A:329-411 Aspartate Aminotransferase, domain 1                     -------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.....ee...............hhhhhhhhhhhhh.............hhhhhhhhhhhhhh..hhhhhh..eeeeeeehhhhhhhhhhhhhhhhh.........eeeee...hhhhhhhhhh....eeeee.ee....eehhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhh...eeeeee......hhhh.eeeeeee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...eee...hhhhhhhhhhhhhee.....eee.hhh...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CL------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ii0 A  15 PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIAENLYFQ 419
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414

Chain B from PDB  Type:PROTEIN  Length:405
 aligned with AATC_HUMAN | P17174 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                        413      
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404        |-     
           AATC_HUMAN    15 PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ------   -
               SCOP domains d3ii0b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -3ii0B01 B:16-49,B:329-411         3ii0B02 B:50-328 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                                   3ii0B01 B:16-49,B:329-411 Aspartate Aminotransferase, domain 1                     -------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.....ee...............hhhhhhhhhhhhhh............hhhhhhhhhhhhhh..hhhhhh..eeeeeeehhhhhhhhhhhhhhhhh.........eeeee...hhhhhhhhhh....eeeee.ee....eehhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhh...eeeeee......hhhh.eeeeeee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...eee...hhhhhhhhhhhhhee.....eee.hhh...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CL------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ii0 B  15 PVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIAENLYFQ 419
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414

Chain C from PDB  Type:PROTEIN  Length:407
 aligned with AATC_HUMAN | P17174 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                          413      
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412|      
           AATC_HUMAN    13 AQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ------   -
               SCOP domains d3ii0c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ---3ii0C01 C:16-49,C:329-411         3ii0C02 C:50-328 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                                   3ii0C01 C:16-49,C:329-411 Aspartate Aminotransferase, domain 1                     -------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.....ee...............hhhhhhhhhhhhh.............hhhhhhhhhhhhhh..hhhhhh..eeeeeeehhhhhhhhhhhhhhhhh.........eeeee...hhhhhhhhhhh...eeeee.ee....eehhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhhhh.eeeeee........hhhhhhhhhhhhhhh...eeeeee......hhhh.eeeeeee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...eee...hhhhhhhhhhhhhee.....eee.hhh...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CL------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ii0 C  13 MQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIAENLYFQ 419
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412

Chain D from PDB  Type:PROTEIN  Length:407
 aligned with AATC_HUMAN | P17174 from UniProtKB/Swiss-Prot  Length:413

    Alignment length:407
                                                                                                                                                                                                                                                                                                                                                                                                                                          413      
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412|      
           AATC_HUMAN    13 AQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIQ------   -
               SCOP domains d3ii0d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains ---3ii0D01 D:16-49,D:329-411         3ii0D02 D:50-328 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                                                                                                                                                                                   3ii0D01 D:16-49,D:329-411 Aspartate Aminotransferase, domain 1                     -------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh.....ee...............hhhhhhhhhhhhhh............hhhhhhhhhhhhhh..hhhhhh..eeeeeeehhhhhhhhhhhhhhhhh.........eeeee...hhhhhhhhhhh...eeeee.ee....eehhhhhhhhhhh.....eeeee...........hhhhhhhhhhhhhhh..eeeeee........hhhhhhhhhhhhhhh...eeeeee......hhhh.eeeeeee..hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh...eee...hhhhhhhhhhh..ee.....eee.hhh...hhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA_TRANSFER_CL------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ii0 D  13 MQPVLVFKLTADFREDPDPRKVNLGVGAYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDDSPALKEKRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRSYRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVMKHRFLFPFFDSAYQGFASGNLERDAWAIRYFVSEGFEFFCAQSFSKNFGLYNERVGNLTVVGKEPESILQVLSQMEKIVRITWSNPPAQGARIVASTLSNPELFEEWTGNVKTMADRILTMRSELRARLEALKTPGTWNHITDQIGMFSFTGLNPKQVEYLVNEKHIYLLPSGRINVSGLTTKNLDYVATSIHEAVTKIAENLYFQ 419
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: automated matches (163)

Protein domain: automated matches (163)

Human (Homo sapiens) [TaxId: 9606] (17)

1a	d3ii0a_	A:
1b	d3ii0b_	B:
1c	d3ii0c_	C:
1d	d3ii0d_	D:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aspartate Aminotransferase; domain 2 (384)

Homologous Superfamily: Type I PLP-dependent aspartate aminotransferase-like (Major domain) (384)

Human (Homo sapiens) (18)

1a	3ii0A02	A:50-328
1b	3ii0B02	B:50-328
1c	3ii0C02	C:50-328
1d	3ii0D02	D:50-328

Architecture: Alpha-Beta Complex (3881)

Topology: Aspartate Aminotransferase, domain 1 (355)

Homologous Superfamily: Aspartate Aminotransferase, domain 1 (354)

Human (Homo sapiens) (15)

2a	3ii0A01	A:16-49,A:329-411
2b	3ii0B01	B:16-49,B:329-411
2c	3ii0C01	C:16-49,C:329-411
2d	3ii0D01	D:16-49,D:329-411

(no "Pfam Domain" information available for 3II0)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (AATC_HUMAN | P17174)

molecular function
	GO:0004069	L-aspartate:2-oxoglutarate aminotransferase activity	Catalysis of the reaction: L-aspartate + 2-oxoglutarate = oxaloacetate + L-glutamate.
	GO:0047801	L-cysteine:2-oxoglutarate aminotransferase activity	Catalysis of the reaction: L-cysteine + 2-oxoglutarate = mercaptopyruvate + L-glutamate.
	GO:0080130	L-phenylalanine:2-oxoglutarate aminotransferase activity	Catalysis of the reaction: L-phenylalanine + 2-oxoglutarate = phenylpyruvate + L-glutamate.
	GO:0031406	carboxylic acid binding	Interacting selectively and non-covalently with a carboxylic acid, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0004609	phosphatidylserine decarboxylase activity	Catalysis of the reaction: H(+) + phosphatidyl-L-serine = CO(2) + phosphatidylethanolamine.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006103	2-oxoglutarate metabolic process	The chemical reactions and pathways involving oxoglutarate, the dianion of 2-oxoglutaric acid. It is a key constituent of the TCA cycle and a key intermediate in amino-acid metabolism.
	GO:0007219	Notch signaling pathway	A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
	GO:0006532	aspartate biosynthetic process	The chemical reactions and pathways resulting in the formation of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid.
	GO:0006533	aspartate catabolic process	The chemical reactions and pathways resulting in the breakdown of aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid.
	GO:0006531	aspartate metabolic process	The chemical reactions and pathways involving aspartate, the anion derived from aspartic acid, 2-aminobutanedioic acid.
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0006520	cellular amino acid metabolic process	The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells.
	GO:0032869	cellular response to insulin stimulus	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an insulin stimulus. Insulin is a polypeptide hormone produced by the islets of Langerhans of the pancreas in mammals, and by the homologous organs of other organisms.
	GO:0043648	dicarboxylic acid metabolic process	The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-).
	GO:0055089	fatty acid homeostasis	Any process involved in the maintenance of an internal steady state of fatty acid within an organism or cell.
	GO:0006094	gluconeogenesis	The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
	GO:0019551	glutamate catabolic process to 2-oxoglutarate	The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including 2-oxoglutarate.
	GO:0019550	glutamate catabolic process to aspartate	The chemical reactions and pathways resulting in the breakdown of glutamate into other compounds, including aspartate.
	GO:0006536	glutamate metabolic process	The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid.
	GO:0006114	glycerol biosynthetic process	The chemical reactions and pathways resulting in the formation of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids.
	GO:0006107	oxaloacetate metabolic process	The chemical reactions and pathways involving oxaloacetate, the anion of oxobutanedioic acid, an important intermediate in metabolism, especially as a component of the TCA cycle.
	GO:0051384	response to glucocorticoid	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucocorticoid stimulus. Glucocorticoids are hormonal C21 corticosteroids synthesized from cholesterol with the ability to bind with the cortisol receptor and trigger similar effects. Glucocorticoids act primarily on carbohydrate and protein metabolism, and have anti-inflammatory effects.
cellular component
	GO:0043679	axon terminus	Terminal inflated portion of the axon, containing the specialized apparatus necessary to release neurotransmitters. The axon terminus is considered to be the whole region of thickening and the terminal button is a specialized region of it.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005764	lysosome	A small lytic vacuole that has cell cycle-independent morphology and is found in most animal cells and that contains a variety of hydrolases, most of which have their maximal activities in the pH range 5-6. The contained enzymes display latency if properly isolated. About 40 different lysosomal hydrolases are known and lysosomes have a great variety of morphologies and functions.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	Cis Peptide Bonds
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		Asn B:195 - Pro B:196	[ RasMol ]
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	3ii0
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1ajs	REFINEMENT AND COMPARISONS OF THE CRYSTAL STRUCTURES OF PIG CYTOSOLIC ASPARTATE AMINOTRANSFERASE AND ITS COMPLEX WITH 2-METHYLASPARTATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 21)

Sites (21, 21)

SS Bonds (0, 0)

Cis Peptide Bonds (10, 10)

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