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(-) Description

Title :  PROPIONYL-COA CARBOXYLASE BETA SUBUNIT, D422L
 
Authors :  L. Diacovich, A. Arabolaza, E. M. Shillito, T. -W. Lin, D. L. Mitchell, H M. M. Melgar
Date :  15 Jul 09  (Deposition) - 02 Jun 10  (Release) - 15 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Accase, Pccase, Acc, Pcc, Propionyl-Coa, Ct, Carboxyltransferase, Polyketide, Fatty Acid, Pks, Fas, Polyketide Synthase, Fatty Acid Synthase, Carboxylase, Beta Subunit, Pccb, Acyl-Coa, Acyl-Coa Carboxylase, Streptomces, Streptomyces Coelicolor, Biotin, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Arabolaza, M. E. Shillito, T. W. Lin, L. Diacovich, M. Melgar, H. Pham, D. Amick, H. Gramajo, S. C. Tsai
Crystal Structures And Mutational Analyses Of Acyl-Coa Carboxylase Beta Subunit Of Streptomyces Coelicolor.
Biochemistry V. 49 7367 2010
PubMed-ID: 20690600  |  Reference-DOI: 10.1021/BI1005305

(-) Compounds

Molecule 1 - PROPIONYL-COA CARBOXYLASE COMPLEX B SUBUNIT
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28C
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PCCB, SCK13.18C, SCO4926
    Mutation: YES
    Organism Scientific: STREPTOMYCES COELICOLOR
    Organism Taxid: 1902
    Strain: A3

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1BTN2Ligand/IonBIOTIN
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
1BTN6Ligand/IonBIOTIN
2SO46Ligand/IonSULFATE ION
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1BTN2Ligand/IonBIOTIN
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:43 , PHE A:106 , PRO A:179 , HIS A:202 , PHE A:221 , ARG B:228BINDING SITE FOR RESIDUE BTN A 5600
2AC2SOFTWARETHR A:486 , ARG A:490 , HOH A:634 , HOH A:637 , HOH A:655 , ASN B:74BINDING SITE FOR RESIDUE SO4 A 531
3AC3SOFTWAREARG A:35 , PHE B:106 , PRO B:179 , HIS B:202 , PHE B:221BINDING SITE FOR RESIDUE BTN B 5601
4AC4SOFTWAREASN A:74 , HOH A:550 , THR B:486 , ARG B:490 , HOH B:591 , HOH B:642 , HOH B:651BINDING SITE FOR RESIDUE SO4 B 531

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IB9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3IB9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IB9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IB9)

(-) Exons   (0, 0)

(no "Exon" information available for 3IB9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:521
 aligned with Q9X4K7_STRCH | Q9X4K7 from UniProtKB/TrEMBL  Length:530

    Alignment length:521
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529 
         Q9X4K7_STRCH    10 DIHTTAGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKHGNIPL 530
               SCOP domains d3ib9a1 A:10-262 automated matches                                                                                                                                                                                                                           d3ib9a2 A:263-530 automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains 3ib9A01 A:10-269 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                           3ib9A02 A:270-530 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhh....hhhhhhhhh...hhhhhhhhhh.....eee......................eeeeeee....eeeeeee...hhhhh..hhhhhhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhhhhh......eeeee..eee.hhhhh.....eeeee....eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhh...................hhhhhhh............hhhhhhhhhhhhhh.eee.......eeeeeee....eeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhh.hhhhh..eeee....eee...hhhhhhhhh.........hhhhhhhhhhhhhhhhh..hhhhhhh....ee.hhhhhhhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ib9 A  10 DIHTTAGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYLVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKHGNIPL 530
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529 


Chain B from PDB  Type:PROTEIN  Length:521
 aligned with Q9X4K7_STRCH | Q9X4K7 from UniProtKB/TrEMBL  Length:530

    Alignment length:521
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529 
         Q9X4K7_STRCH    10 DIHTTAGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYDVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKHGNIPL 530
               SCOP domains d3ib9b1 B:10-262 automated matches                                                                                                                                                                                                                           d3ib9b2 B:263-530 automated matches                                                                                                                                                                                                                                          SCOP domains
               CATH domains 3ib9B01 B:10-269 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                           3ib9B02 B:270-530 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhh.....eee......................eeeeeee....eeeeeee...hhhhh.hhhhhhhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee.hhhhh.....eeeee....eee..hhhhhhhhhh...hhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhh.....................hhhhhhhh.........hhhhhhhhhhhhhh.eee.......eeeeeeee..eeeeeeee...hhhhh.hhhhhhhhhhhhhhhhhh...eeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeeeehhhhhhh.hhhhh..eeee....eee..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhh....ee.hhhhhhhhhhhhhhhhh................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3ib9 B  10 DIHTTAGKLADLRRRIEEATHAGSARAVEKQHAKGKLTARERIDLLLDEGSFVELDEFARHRSTNFGLDANRPYGDGVVTGYGTVDGRPVAVFSQDFTVFGGALGEVYGQKIVKVMDFALKTGCPVVGINDSGGARIQEGVASLGAYGEIFRRNTHASGVIPQISLVVGPCAGGAVYSPAITDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNSTSGVAHHMAGDEKDAVEYVKQLLSYLPSNNLSEPPAFPEEADLAVTDEDAELDTIVPDSANQPYDMHSVIEHVLDDAEFFETQPLFAPNILTGFGRVEGRPVGIVANQPMQFAGCLDITASEKAARFVRTCDAFNVPVLTFVDVPGFLPGVDQEHDGIIRRGAKLIFAYAEATVPLITVITRKAFGGAYLVMGSKHLGADLNLAWPTAQIAVMGAQGAVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIVRGLRQLRTKRESLPPKKHGNIPL 530
                                    19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IB9)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q9X4K7_STRCH | Q9X4K7)
molecular function
    GO:0003989    acetyl-CoA carboxylase activity    Catalysis of the reaction: ATP + acetyl-CoA + HCO3- = ADP + phosphate + malonyl-CoA.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
biological process
    GO:0006633    fatty acid biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
cellular component
    GO:0009317    acetyl-CoA carboxylase complex    A protein complex that catalyzes the first step in long-chain fatty acid biosynthesis. For example, in E. coli the complex is heterohexameric and composed of biotin carbonyl carrier protein, biotin carboxylase and the acetate CoA-transferase complex.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q9X4K7_STRCH | Q9X4K7: 1xnv 1xnw 1xny 1xo6 3iav 3ibb 3mfm

(-) Related Entries Specified in the PDB File

3iav SAME PROTEIN WITH D422V MUTATION
3ibb SAME PROTEIN WITH D422A MUTATION