3HRY - JenaLib

Asymmetric Unit (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PHD IN A TRIGONAL SPACE GROUP AND PARTIALLY DISORDERED

Authors :   A. Garcia-Pino, R. Loris

Date :   10 Jun 09 (Deposition) - 23 Jun 10 (Release) - 21 Jul 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.25

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C  (2x)

Keywords :   Phd, Prevent Host Death, Intrinsic Disorder, Doc, Antitoxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Garcia-Pino, S. Balasubramanian, L. Wyns, E. Gazit, H. De Greve, R. D. Magnuson, D. Charlier, N. A. Van Nuland, R. Loris
Allostery And Intrinsic Disorder Mediate Transcription Regulation By Conditional Cooperativity.
Cell(Cambridge, Mass. ) V. 142 101 2010
PubMed-ID: 20603017 | Reference-DOI: 10.1016/J.CELL.2010.05.039

Molecule 1 - PREVENT HOST DEATH PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET21B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PHD, PHD, IPF_68
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	PHD PROTEIN

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (2x)	:			C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 3HRY)

(no "Site" information available for 3HRY)

(no "SS Bond" information available for 3HRY)

Asymmetric Unit

No.	Residues
1	Ala A:54	-	Glu A:55
2	Ser A:65	-	Thr A:66
3	Ala B:22	-	Gly B:23
4	Ala B:51	-	Leu B:52
5	Asp B:53	-	Ala B:54
6	Glu C:21	-	Ala C:22
7	Gly C:23	-	Glu C:24
8	Tyr C:47	-	Lys C:48

(no "SAP(SNP)/Variant" information available for 3HRY)

(no "PROSITE Motif" information available for 3HRY)

(no "Exon" information available for 3HRY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:67
 aligned with PHD_BPP1 | Q06253 from UniProtKB/Swiss-Prot  Length:73

    Alignment length:67
                                    10        20        30        40        50        60       
              PHD_BPP1    1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAEFASLFDTLDSTN 67
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhhhhhhhhh....eeee......eeeeehhhhhhhhhh......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  3hry A  1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAEFASLFDTLDSTN 67
                                    10        20        30        40        50        60

Chain A from PDB  Type:PROTEIN  Length:67
 aligned with Q79A04_ECOLX | Q79A04 from UniProtKB/TrEMBL  Length:73

    Alignment length:67
                                    10        20        30        40        50        60       
          Q79A04_ECOLX    1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAEFASLFDTLDSTN 67
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhhhhhhhhh....eeee......eeeeehhhhhhhhhh......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                  3hry A  1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAEFASLFDTLDSTN 67
                                    10        20        30        40        50        60

Chain B from PDB  Type:PROTEIN  Length:55
 aligned with PHD_BPP1 | Q06253 from UniProtKB/Swiss-Prot  Length:73

    Alignment length:55
                                    10        20        30        40        50     
              PHD_BPP1    1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAE 55
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhhhhhhhhh.....eee......eeeeehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                  3hry B  1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAE 55
                                    10        20        30        40        50

Chain B from PDB  Type:PROTEIN  Length:55
 aligned with Q79A04_ECOLX | Q79A04 from UniProtKB/TrEMBL  Length:73

    Alignment length:55
                                    10        20        30        40        50     
          Q79A04_ECOLX    1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAE 55
               SCOP domains ------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeehhhhhhhhhhhhhhhh.....eee......eeeeehhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------- Transcript
                  3hry B  1 MQSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKKAALDAE 55
                                    10        20        30        40        50

Chain C from PDB  Type:PROTEIN  Length:43
 aligned with PHD_BPP1 | Q06253 from UniProtKB/Swiss-Prot  Length:73

    Alignment length:48
                                    11        21        31        41        
              PHD_BPP1    2 QSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKK 49
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author .ee....-----.............ee..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                  3hry C  2 QSINFRT-----SEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKK 49
                                  |  -  |     21        31        41        
                                  8    14

Chain C from PDB  Type:PROTEIN  Length:43
 aligned with Q79A04_ECOLX | Q79A04 from UniProtKB/TrEMBL  Length:73

    Alignment length:48
                                    11        21        31        41        
          Q79A04_ECOLX    2 QSINFRTARGNLSEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKK 49
               SCOP domains ------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------ Pfam domains
         Sec.struct. author .ee....-----.............ee..................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------ Transcript
                  3hry C  2 QSINFRT-----SEVLNNVEAGEEVEITRRGREPAVIVSKATFEAYKK 49
                                  |  -  |     21        31        41        
                                  8    14

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3HRY)

(no "CATH Domain" information available for 3HRY)

(no "Pfam Domain" information available for 3HRY)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (PHD_BPP1 | Q06253)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.

Chain A,B,C (Q79A04_ECOLX | Q79A04)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 3hry)

	Sites
(no "Sites" information available for 3hry)

	Cis Peptide Bonds
		Ala A:54 - Glu A:55	[ RasMol ]
		Ala B:22 - Gly B:23	[ RasMol ]
		Ala B:51 - Leu B:52	[ RasMol ]
		Asp B:53 - Ala B:54	[ RasMol ]
		Glu C:21 - Ala C:22	[ RasMol ]
		Gly C:23 - Glu C:24	[ RasMol ]
		Ser A:65 - Thr A:66	[ RasMol ]
		Tyr C:47 - Lys C:48	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

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	3hry
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		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
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	PHD_BPP1 \| Q06253
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		Protein-protein Interaction	:	DIP
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	Q79A04_ECOLX \| Q79A04
		Comparative Protein Structure Models	:	ModBase
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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
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	PHD_BPP1 \| Q06253
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)
	Q79A04_ECOLX \| Q79A04
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PHD_BPP1 \| Q06253	:	3dd7 3hs2 3k33 3kh2 4zlx 4zm0 4zm2

3dd7	CRYSTAL STRUCTURE OF C-TERMINAL DOMAIN OF PHD
3hs2	CRYSTAL STRUCTURE OF PHD FROM BACTERIOPHAGE P1 TRUNCATED TO SER58

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (0, 0)

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Gene Ontology (3, 3)

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