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(-) Description

Title :  CRYSTAL STRUCTURE OF AN AMIDOHYDROLASE GI:44264246 FROM AN EVIRONMENTAL SAMPLE OF SARGASSO SEA
 
Authors :  A. A. Fedorov, E. V. Fedorov, R. Toro, F. M. Raushel, S. K. Burley, S. C Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  03 Jun 09  (Deposition) - 16 Jun 09  (Release) - 21 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  A,B  (1x)
Keywords :  Amidohydrolase, Signature Of Zn Ligands, Structural Genomics, Nysgxrc, Target 9236E, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. S. Hall, A. A. Fedorov, R. Marti-Arbona, E. V. Fedorov, P. Kolb, J. M. Sauder, S. K. Burley, B. K. Shoichet, S. C. Almo, F. M. Raushel
The Hunt For 8-Oxoguanine Deaminase.
J. Am. Chem. Soc. V. 132 1762 2010
PubMed-ID: 20088583  |  Reference-DOI: 10.1021/JA909817D

(-) Compounds

Molecule 1 - AMIDOHYDROLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: UNIDENTIFIED
    Organism Taxid: 32644

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B
Biological Unit 3 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:93 , HIS A:95 , HIS A:259 , ASP A:347BINDING SITE FOR RESIDUE ZN A 480
2AC2SOFTWAREHIS B:93 , HIS B:95 , HIS B:259 , ASP B:347BINDING SITE FOR RESIDUE ZN B 480

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HPA)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Asn A:352 -Asp A:353
2Asn B:352 -Asp B:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HPA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HPA)

(-) Exons   (0, 0)

(no "Exon" information available for 3HPA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.......eeeeeeeeee..eeeeeee.hhh.....eeee...eeeee.eee...hhhhhhh.........hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhhhhh.......eeeeeee......hhhhhhhhhhhhhhhh.eeeeee..hhhhhhhhhhhhhhhh......eeeee....hhhhhhhhhhhh.eeeehhhhhhhh.....hhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..............eeeee..hhhhh....hhhhhhhhh......eeee..eeeee..ee...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hpa A  29 KTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSEPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVNDIAYTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPCSNMRLASGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALKPGMAADFAAFDLRQPLFAGALHDPVAALVFCAPSQTAYTVVNGKVVVREGRLATLDLPPVIERHNALAHALVEAAR 479
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178      |204       214       224       234       244       254       264    || 281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471        
                                                                                                                                                                                      185|                                                                269|                                                                                                                                                                                                          
                                                                                                                                                                                       202                                                                 277                                                                                                                                                                                                          


Chain B from PDB  Type:PROTEIN  Length:428
                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee.......eeeeeeeeee..eeeeeee.hhh.....eeee...eeeee.eee...hhhhhhh..hhhhhh.hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh..eeeee..........hhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhhhhh.......eeeeeee......hhhhhhhhhhhhhhhh.eeeeee..hhhhhh.hhhhhhhh.......eeeee....hhhhhhhhhhhh.eeeehhhhhhhh.....hhhhhhhhh..eee...........hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..............eeeee..hhhhh....hhhhhhhhh......eeee..eeeee..ee...hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hpa B  29 KTLLVKHADVLVTMDDTRRELRDAGLYIEDNRIVAVGPSAELPETADEVLDLRGHLVIPGLVNTHHHMYQSLTRAVPAAQNAELFGWLTNLYKIWAHLTPEMIEVSTLTAMAELLQSGCTTSSDHLYIYPNGSRLDDSIGAAQRIGMRFHASRGAMSEPDILRDTQRLIETYHDEGRYAMLRVVVAPCSPFSVSRDLMRDAAVLAREYGVSLHTHLAENVNDIAYTPAEYAEDLGWVGHDVWHAHCVQLDDAGIGLFARTGTGVAHCPCSNMRLASGIAPVKKMRLAGVPVGLGVDGSASNDGAQMVAEVRQALLLQRVGFGPDAMTAREALEIATLGGAKVLNRDDIGALKPGMAADFAAFDLRQPLFAGALHDPVAALVFCAPSQTAYTVVNGKVVVREGRLATLDLPPVIERHNALAHALVEAAR 479
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178      |204       214       224       234       244       254       264    || 281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471        
                                                                                                                                                                                      185|                                                                269|                                                                                                                                                                                                          
                                                                                                                                                                                       202                                                                 277
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HPA)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HPA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HPA)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3HPA)

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  3hpa
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

3h4u THE SAME DEPOSITION WITH WRONG POLARITY OF HIS 259 SIDE CHAIN RELATED ID: NYSGXRC-9236E RELATED DB: TARGETDB