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(-) Description

Title :  PUTATIVE HEMOLYSIN FROM STREPTOCOCCUS THERMOPHILUS.
 
Authors :  J. Osipiuk, C. Hatzos, G. Cobb, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  03 Jun 09  (Deposition) - 16 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Apc64019, Hemolysin, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, C. Hatzos, G. Cobb, A. Joachimiak
X-Ray Crystal Structure Of Putative Hemolysin From Streptococcus Thermophilus.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HEMOLYSIN, PUTATIVE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: STU1215
    Organism Scientific: STREPTOCOCCUS THERMOPHILUS
    Organism Taxid: 264199
    Strain: LMG 18311

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 6)

Asymmetric/Biological Unit (2, 6)
No.NameCountTypeFull Name
1EOH1Ligand/IonETHANOL
2MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:112 , VAL A:113 , TYR A:134 , PHE A:136 , HOH A:522BINDING SITE FOR RESIDUE EOH A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HP7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HP7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HP7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HP7)

(-) Exons   (0, 0)

(no "Exon" information available for 3HP7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:275
 aligned with Q5M3Z4_STRT2 | Q5M3Z4 from UniProtKB/TrEMBL  Length:288

    Alignment length:276
                             1                                                                                                                                                                                                                                                                                  
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269      
         Q5M3Z4_STRT2     - -MPKERVDVLAYKQGLFETREQAKRGVMAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVSRGGLKLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVKPQFEAGREQIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEKTDSPQNDVPTSIKEVVAQAHKEFKKNEEE 275
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeehhhhhhhh....hhhhhhhhhhh..eee............eee....eee..........hhhhhhhhhhhh.......eeeee....hhhhhhhhhh...eeeee.......hhhhhh...eeee...hhhhhhhhhh......eeee.....hhhhhhhhhhhhh....eeeeeehhhhh.hhhhh.-.....hhhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhh..eeeeeee.......hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hp7 A   0 AmPKERVDVLAYKQGLFETREQAKRGVmAGLVVNVINGERYDKPGEKIDDGTELKLKGEKLRYVSRGGLKLEKALAVFNLSVEDmITIDIGASTGGFTDVmLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSmEQYNFRYAEPVDFTEGLPSFASIDVSFISLNLILPALAKILVDGGQVVALVKPQFEAGREQIG-NGIVRESSIHEKVLETVTAFAVDYGFSVKGLDFSPIQGGHGNIEFLAHLEKTDSPQNDVPTSIKEVVAQAHKEFKKNEEE 275
                             |       9        19       |29        39        49        59        69        79    |   89        99|      109       119       129 |     139       149       159       169       179       189    | |199       209       219       229       239       249       259       269      
                             |                        27-MSE                                                   84-MSE         100-MSE                        131-MSE                                                        194 |                                                                               
                             1-MSE                                                                                                                                                                                            196
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HP7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HP7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HP7)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q5M3Z4_STRT2 | Q5M3Z4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
biological process
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.

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