3HL4 - JenaLib

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:82 , GLY A:83 , ILE A:84 , PHE A:85 , HIS A:89 , GLY A:91 , HIS A:92 , ALA A:95 , CYS A:113 , LYS A:122 , PRO A:150 , TRP A:151 , HIS A:168 , ASP A:169 , TYR A:173 , TYR A:182 , GLN A:195 , ARG A:196 , THR A:197 , ILE A:200 , HOH A:401 , HOH A:403 , HOH A:404 , HOH A:405 , HOH A:406	BINDING SITE FOR RESIDUE CDC A 237
02	AC2	SOFTWARE	ASP A:170 , LYS A:186 , PRO A:193 , HOH A:502 , HOH A:515 , HOH A:517 , ALA B:159 , HOH B:447	BINDING SITE FOR RESIDUE GOL A 238
03	AC3	SOFTWARE	GLU A:198 , GLY A:199 , HOH A:416 , GLU B:131	BINDING SITE FOR RESIDUE FMT A 239
04	AC4	SOFTWARE	ARG A:196 , HOH A:415 , VAL B:60	BINDING SITE FOR RESIDUE FMT A 240
05	AC5	SOFTWARE	ARG A:42 , GLN A:43 , GLU A:187 , ASN B:101	BINDING SITE FOR RESIDUE FMT A 241
06	AC6	SOFTWARE	GLU A:198 , HOH A:499	BINDING SITE FOR RESIDUE FMT A 242
07	AC7	SOFTWARE	ASP B:82 , GLY B:83 , ILE B:84 , PHE B:85 , HIS B:89 , GLY B:91 , HIS B:92 , ALA B:95 , CYS B:113 , LYS B:122 , PRO B:150 , TRP B:151 , HIS B:168 , ASP B:169 , TYR B:173 , TYR B:182 , GLN B:195 , ARG B:196 , THR B:197 , ILE B:200 , HOH B:401 , HOH B:403 , HOH B:404 , HOH B:405 , HOH B:406	BINDING SITE FOR RESIDUE CDC B 237
08	AC8	SOFTWARE	SER B:178 , ASP B:179	BINDING SITE FOR RESIDUE FMT B 238
09	AC9	SOFTWARE	PHE B:47 , SER B:48 , ASP B:49 , VAL B:146 , ARG B:147	BINDING SITE FOR RESIDUE FMT B 239
10	BC1	SOFTWARE	ASN B:128 , ASN B:130	BINDING SITE FOR RESIDUE FMT B 240

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (5, 10)

Asymmetric/Biological Unit (5, 10)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENSRNOT00000002403	1	ENSRNOE00000016700	chr11:70173684-70173594	91	PCY1A_RAT	-	0	0	-	-
1.2	ENSRNOT00000002403	2	ENSRNOE00000016703	chr11:70154940-70154814	127	PCY1A_RAT	1-39	39	0	-	-
1.3	ENSRNOT00000002403	3	ENSRNOE00000016704	chr11:70151153-70151054	100	PCY1A_RAT	40-73	34	2	A:40-73 B:40-73	34 34
1.4	ENSRNOT00000002403	4	ENSRNOE00000016705	chr11:70143003-70142887	117	PCY1A_RAT	73-112	40	2	A:73-112 B:73-112	40 40
1.5	ENSRNOT00000002403	5	ENSRNOE00000016706	chr11:70141771-70141620	152	PCY1A_RAT	112-162	51	2	A:112-162 B:112-162	51 51
1.6	ENSRNOT00000002403	6	ENSRNOE00000016707	chr11:70138993-70138915	79	PCY1A_RAT	163-189	27	2	A:163-189 B:163-189	27 27
1.7	ENSRNOT00000002403	7	ENSRNOE00000016708	chr11:70138480-70138338	143	PCY1A_RAT	189-236	48	2	A:189-215 B:189-216	27 28
1.8	ENSRNOT00000002403	8	ENSRNOE00000016713	chr11:70135332-70135144	189	PCY1A_RAT	237-299	63	0	-	-
1.9	ENSRNOT00000002403	9	ENSRNOE00000016717	chr11:70133875-70130574	3302	PCY1A_RAT	300-367	68	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:176
 aligned with PCY1A_RAT | P19836 from UniProtKB/Swiss-Prot  Length:367

    Alignment length:176
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209      
            PCY1A_RAT    40 GLRQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDV 215
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh...........hhhhhhhh......eeeeeee.....hhhhhhhhhhhhh....eeeeeee.hhhhhhhhh.....hhhhhhhhhhh.....eee.......hhhhhhhh...eeeee............hhhhhhh..eeee......hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: A:40-73            --------------------------------------Exon 1.5  PDB: A:112-162 UniProt: 112-162          Exon 1.6  PDB: A:163-189   -------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.4  PDB: A:73-112 UniProt: 73-112 ----------------------------------------------------------------------------Exon 1.7  PDB: A:189-215    Transcript 1 (2)
                 3hl4 A  40 GLRQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDV 215
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

Chain B from PDB  Type:PROTEIN  Length:177
 aligned with PCY1A_RAT | P19836 from UniProtKB/Swiss-Prot  Length:367

    Alignment length:177
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       
            PCY1A_RAT    40 GLRQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVY 216
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhh...........hhhhhhhh......eeeeeee.....hhhhhhhhhhhhh....eeeeeee.hhhhhhhhh.....hhhhhhhhhhh.....eee.......hhhhhhhh...eeeee............hhhhhhh..eeee......hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.3  PDB: B:40-73            --------------------------------------Exon 1.5  PDB: B:112-162 UniProt: 112-162          Exon 1.6  PDB: B:163-189   --------------------------- Transcript 1 (1)
           Transcript 1 (2) ---------------------------------Exon 1.4  PDB: B:73-112 UniProt: 73-112 ----------------------------------------------------------------------------Exon 1.7  PDB: B:189-216     Transcript 1 (2)
                 3hl4 B  40 GLRQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTHNFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEGISTSDIITRIVRDYDVY 216
                                    49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (22, 22)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (PCY1A_RAT | P19836)

molecular function
	GO:0005516	calmodulin binding	Interacting selectively and non-covalently with calmodulin, a calcium-binding protein with many roles, both in the calcium-bound and calcium-free states.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004105	choline-phosphate cytidylyltransferase activity	Catalysis of the reaction: CTP + choline phosphate = diphosphate + CDP-choline.
	GO:0008289	lipid binding	Interacting selectively and non-covalently with a lipid.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0031210	phosphatidylcholine binding	Interacting selectively and non-covalently with phosphatidylcholine, a class of glycophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of choline.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006657	CDP-choline pathway	The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine.
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0006656	phosphatidylcholine biosynthetic process	The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline.
	GO:0008654	phospholipid biosynthetic process	The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005783	endoplasmic reticulum	The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
	GO:0005789	endoplasmic reticulum membrane	The lipid bilayer surrounding the endoplasmic reticulum.
	GO:0019898	extrinsic component of membrane	The component of a membrane consisting of gene products and protein complexes that are loosely bound to one of its surfaces, but not integrated into the hydrophobic region.
	GO:0042587	glycogen granule	Cytoplasmic bead-like structures of animal cells, visible by electron microscope. Each granule is a functional unit with the biosynthesis and catabolism of glycogen being catalyzed by enzymes bound to the granule surface.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005635	nuclear envelope	The double lipid bilayer enclosing the nucleus and separating its contents from the rest of the cytoplasm; includes the intermembrane space, a gap of width 20-40 nm (also called the perinuclear space).
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	3hl4
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	PCY1A_RAT \| P19836
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	2.7.7.15
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (10, 10)