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(-) Description

Title :  MINOR EDITOSOME-ASSOCIATED TUTASE 1
 
Authors :  J. Stagno, H. Luecke
Date :  20 May 09  (Deposition) - 12 May 10  (Release) - 18 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.56
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Tutase, Nucleotidyltransferase, Trypanosoma, Editosome, Rna Editing, Utp-Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Stagno, I. Aphasizheva, J. Bruystens, H. Luecke, R. Aphasizhev
Structure Of The Mitochondrial Editosome-Like Complex Associated Tutase 1 Reveals Divergent Mechanisms Of Utp Selection And Domain Organization.
J. Mol. Biol. V. 399 464 2010
PubMed-ID: 20403364  |  Reference-DOI: 10.1016/J.JMB.2010.04.021

(-) Compounds

Molecule 1 - MINOR EDITOSOME-ASSOCIATED TUTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21B
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TB927.1.1330
    Organism Scientific: TRYPANOSOMA BRUCEI
    Organism Taxid: 5691

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 24)

Asymmetric Unit (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 3HJ4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HJ4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:307 -Pro A:308
2Gly B:307 -Pro B:308

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HJ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HJ4)

(-) Exons   (0, 0)

(no "Exon" information available for 3HJ4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:381
 aligned with Q4GZ86_TRYB2 | Q4GZ86 from UniProtKB/TrEMBL  Length:406

    Alignment length:381
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382 
         Q4GZ86_TRYB2     3 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFRESDT 383
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhh.......eeeeee....hhhhh.hhhhhhhhhhhhhhhhhhhhhhh.eeeeee.....eeeee......eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhh................hhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hj4 A   3 VAKREFIRGmmAHYRASLPPPEHSVVIHELQKRVLDIGmLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGmERVDEQNNKRmTRFGKEASAmGmEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTmALmVLQELGLLPVFSKPTGEFGELTVADAEmLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASmQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREmLIDKESELKFDEVFRESDT 383
                                    12|       22        32        42        52        62        72        82        92|      102| |    112       122       132       142       152       162       172       182     | 192       202       212      |222       232       242       252       262       272       282       292       302       312     | 322       332       342       352       362 |     372       382 
                                    12-MSE                       41-MSE                                   82-MSE     93-MSE   103-MSE                                                                              188-MSE                        219-MSE                                                                                            318-MSE                                       364-MSE               
                                     13-MSE                                                                                     105-MSE                                                                               191-MSE                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:383
 aligned with Q4GZ86_TRYB2 | Q4GZ86 from UniProtKB/TrEMBL  Length:406

    Alignment length:383
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382   
         Q4GZ86_TRYB2     3 VAKREFIRGMMAHYRASLPPPEHSVVIHELQKRVLDIGMLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGMERVDEQNNKRMTRFGKEASAMGMEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTMALMVLQELGLLPVFSKPTGEFGELTVADAEMLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASMQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREMLIDKESELKFDEVFRESDTVP 385
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhh.......eeeeee..........hhhhhhhhhhhhhhhhhhhhhhh.eeeeee.....eeeee......eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhh..hhhhhhhhhhhhhhhh................hhhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh......................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hj4 B   3 VAKREFIRGmmAHYRASLPPPEHSVVIHELQKRVLDIGmLAVNKAHVELFGSHVSGFCTPHSDADISLTYRNFSPWLQGmERVDEQNNKRmTRFGKEASAmGmEDVRYIRARIPVVQFTDGVTGIHCDVSIGNIGGVENSKILCAIRQVFPDFYGAYIHLVKAWGKAREVIAPERSTFNSFTVTTmALmVLQELGLLPVFSKPTGEFGELTVADAEmLLQEFKLPPIYDSLHDDDEKLGEAVFFCLQRFAEYYAKYDFSAGTVSLIHPRRHRTVYERVVRRHLELLGSRKRLEWEKHIAEHKEDGPLDENDFSASmQNETTQRPSNSPYVVEDFVNYVNCGRRVQASRVRHIQQEFNRLREmLIDKESELKFDEVFRESDTVP 385
                                    12|       22        32        42        52        62        72        82        92|      102| |    112       122       132       142       152       162       172       182     | 192       202       212      |222       232       242       252       262       272       282       292       302       312     | 322       332       342       352       362 |     372       382   
                                    12-MSE                       41-MSE                                   82-MSE     93-MSE   103-MSE                                                                              188-MSE                        219-MSE                                                                                            318-MSE                                       364-MSE                 
                                     13-MSE                                                                                     105-MSE                                                                               191-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HJ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HJ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HJ4)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (Q4GZ86_TRYB2 | Q4GZ86)
molecular function
    GO:0050265    RNA uridylyltransferase activity    Catalysis of the reaction: UTP + RNA(n) = diphosphate + RNA(n+1).
biological process
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.
cellular component
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q4GZ86_TRYB2 | Q4GZ86: 3hiy 3hj1

(-) Related Entries Specified in the PDB File

3hiy MINOR EDITOSOME-ASSOCIATED TUTASE1 WITH BOUND UTP AND MG
3hj1 MINOR EDITOSOME-ASSOCIATED TUTASE1 WITH BOUND UTP