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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE EXOPOLYPHOSPHATASE (17739545) FROM AGROBACTERIUM TUMEFACIENS STR. C58 (DUPONT) AT 2.30 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 May 09  (Deposition) - 16 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  17739545, Putative Exopolyphosphatase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Exopolyphosphatase (17739545) From Agrobacterium Tumefaciens Str. C58 (Dupont) At 2. 30 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE EXOPOLYPHOSPHATASE
    Atcc: 33970
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: 17739545, AGR_C_2117, ATU1145, PPX
    Organism Scientific: AGROBACTERIUM TUMEFACIENS STR.
    Organism Taxid: 176299
    Strain: C58

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric/Biological Unit (4, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CL2Ligand/IonCHLORIDE ION
3MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
4MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:39 , GLU A:323 , SER A:391 , ARG B:373BINDING SITE FOR RESIDUE MPD A 508
2AC2SOFTWAREHIS A:334 , LEU A:338 , LEU A:442 , TYR A:446 , SER A:449 , SER A:451BINDING SITE FOR RESIDUE ACT A 509
3AC3SOFTWAREARG A:410 , TYR A:446 , ARG A:490BINDING SITE FOR RESIDUE CL A 510
4AC4SOFTWAREARG A:486 , ARG A:490BINDING SITE FOR RESIDUE CL A 511
5AC5SOFTWAREARG A:373 , ALA B:37 , ALA B:320 , GLU B:323 , SER B:391BINDING SITE FOR RESIDUE MPD B 508
6AC6SOFTWAREPRO B:15 , GLN B:83 , GLN B:85BINDING SITE FOR RESIDUE ACT B 509

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HI0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HI0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HI0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HI0)

(-) Exons   (0, 0)

(no "Exon" information available for 3HI0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:501
 aligned with A9CJF9_AGRFC | A9CJF9 from UniProtKB/TrEMBL  Length:507

    Alignment length:505
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502     
         A9CJF9_AGRFC     3 RSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPLEEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVAADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGLNDNGTTEPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYCDFAGERLDGRLQQLAKLTGKRLAFVFE 507
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............eeeeee...eeeeeee........eeeeeeee.....hhhhhh..hhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhh.hhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee..ee...eee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh.........eeehhhhhhhhhhhhh...----.hhhhhhh...hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhheeee.......eeeeehhhhhhhhhhhhhhhhhhhhhhhh..eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hi0 A   3 RSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRmHEEGVTRALmALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHmEISGYPLHmmQGYELPLEEmLNFLEEVIVSRD----AWQAVSKNRRSLLPFGAIAmREVLRAmKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVAADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGLNDNGTTEPLAAmAGERLQELGKLLGGLLRVVYLFSASmPGVVDHLKFRKSDNPDIDLEFVVPHDYCDFAGERLDGRLQQLAKLTGKRLAFVFE 507
                                    12        22        32        42        52       |62       |72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222|      232|      242|      252  |    262       272      |282   |   292       302       312       322       332       342       352       362       372       382       392       402       412       422   |   432       442       452       462       472       482       492       502     
                                                                                    60-MSE    70-MSE                                                                                                                                                  223-MSE  232-MSE    243-MSE     255  260                279-MSE  |                                                                                                                                         426-MSE                   452-MSE                                                   
                                                                                                                                                                                                                                                                233-MSE                                              286-MSE                                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:493
 aligned with A9CJF9_AGRFC | A9CJF9 from UniProtKB/TrEMBL  Length:507

    Alignment length:504
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502    
         A9CJF9_AGRFC     3 RSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRMHEEGVTRALMALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHMEISGYPLHMMQGYELPLEEMLNFLEEVIVSRDSKDPAWQAVSKNRRSLLPFGAIAMREVLRAMKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVAADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGLNDNGTTEPLAAMAGERLQELGKLLGGLLRVVYLFSASMPGVVDHLKFRKSDNPDIDLEFVVPHDYCDFAGERLDGRLQQLAKLTGKRLAFVF 506
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............eeeeee....eeeeee........eeeeeee......hhhhhh..hhhhhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhh.hhhhhhhhhhhhhh...ee.hhhhhhhhhhhhhhhhh...eeeeeee....eeeeeee..ee...eee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhh..........eeehhhhhhhhhhhhh...-----------....hhhhhhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhheeee.......eeee.hhhhhhhhhhhhhhhhhhhhhhhh..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hi0 B   3 RSEAQGRLTGLAPVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTGRmHEEGVTRALmALRRFHVLSEQAQAQKLYVLATAAAREAENGPDFIREAEAILGCEIEVLSGEKEALYSAYGVISGFYQPDGIAGDLGGGSLELIDIKDKSCGEGITLPLGGLRLSEQSDGSLEKAATIARKHVKSFAKLLAAGEGRTFYAVGGTWRNIAKLHmEISGYPLHmmQGYELPLEEmLNFLEEVIVSRD-----------NRRSLLPFGAIAmREVLRAmKPAKIAFSAQGVREGYLYSLLTEAERESDPLLVAADELAILRARSPEHARELADWSGRTFPVFGIDETEEESRYRQAACLLADISWRAHPDYRGLQALNIIAHSSFVAITHPGRAYIALANYYRFEGLNDNGTTEPLAAmAGERLQELGKLLGGLLRVVYLFSASmPGVVDHLKFRKSDNPDIDLEFVVPHDYCDFAGERLDGRLQQLAKLTGKRLAFVF 506
                                    12        22        32        42        52       |62       |72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222|      232|      242|      252  |      -    |  272      |282   |   292       302       312       322       332       342       352       362       372       382       392       402       412       422   |   432       442       452       462       472       482       492       502    
                                                                                    60-MSE    70-MSE                                                                                                                                                  223-MSE  232-MSE    243-MSE     255         267         279-MSE  |                                                                                                                                         426-MSE                   452-MSE                                                  
                                                                                                                                                                                                                                                                233-MSE                                              286-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HI0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HI0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HI0)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (A9CJF9_AGRFC | A9CJF9)
molecular function
    GO:0004309    exopolyphosphatase activity    Catalysis of the reaction: polyphosphate(n) + H2O = polyphosphate(n-1) + phosphate.
biological process
    GO:0006793    phosphorus metabolic process    The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group (PO4).

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