3HGL - JenaLib

Title :   CRYSTAL OF AVRPTOB 121-205

Authors :   J. Dong, F. Xiao, F. Fan, L. Gu, H. Cang, G. B. Martin, J. Chai

Date :   14 May 09 (Deposition) - 23 Jun 09 (Release) - 18 Aug 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A

Keywords :   Five Helices, Hypersensitive Response Elicitation, Ligase, Secreted, Ubl Conjugation, Ubl Conjugation Pathway, Virulence (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Dong, F. Xiao, F. Fan, L. Gu, H. Cang, G. B. Martin, J. Chai
Crystal Structure Of The Complex Between Pseudomonas Effector Avrptob And The Tomato Pto Kinase Reveals Both A Shared And A Unique Interface Compared With Avrpto-Pto
Plant Cell V. 21 1846 2009
PubMed-ID: 19509331 | Reference-DOI: 10.1105/TPC.109.066878
(for further references see the PDB file header)

Compounds

Molecule 1 - EFFECTOR PROTEIN HOPAB2
	Chains	:	A
	EC Number	:	6.3.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PGEX-6P-1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 121-205
	Gene	:	HOPAB2, AVRPTOB, PSPTO_3087
	Organism Scientific	:	PSEUDOMONAS SYRINGAE PV. TOMATO
	Organism Taxid	:	323
	Synonym	:	AVRPTOB, AVIRULENCE PROTEIN AVRPTOB, E3 UBIQUITIN- PROTEIN LIGASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:78
 aligned with HPAB2_PSESM | Q8RSY1 from UniProtKB/Swiss-Prot  Length:553

    Alignment length:78
                                   133       143       153       163       173       183       193        
          HPAB2_PSESM   124 GAVAHANSIVQQLVSEGADISHTRNMLRNAMNGDAVAFSRVEQNIFRQHFPNMPMHGISRDSELAIELRGALRRAVHQ 201
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh......hhhhhhhhhhhh.hhhhhh....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3hgl A   1 GAVAHANSIVQQLVSEGADISHTRNmLRNAmNGDAVAFSRVEQNIFRQHFPNmPmHGISRDSELAIELRGALRRAVHQ  78
                                    10        20     |  30|       40        50  | |   60        70        
                                                    26-MSE|                    53-MSE                     
                                                         31-MSE                  55-MSE

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (HPAB2_PSESM | Q8RSY1)

molecular function
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0052018	modulation by symbiont of RNA levels in host	The alteration by an organism of the levels of RNA in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0034053	modulation by symbiont of host defense-related programmed cell death	Any process in which an organism modulates the frequency, rate or extent of defense-related programmed cell death in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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