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(-) Description

Title :  BACILLUS ANTHRACIS NICOTINATE MONONUCLEOTIDE ADENYLYTRANSFERASE (NADD) IN COMPLEX WITH INHIBITOR CID 3289443
 
Authors :  H. Zhang, N. Huang, Y. Eyobo
Date :  11 May 09  (Deposition) - 08 Sep 09  (Release) - 08 Sep 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.02
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Enzyme-Inhibitor Complex, Nad, Nucleotidyltransferase, Pyridine Nucleotide Biosynthesis, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Sorci, Y. Pan, Y. Eyobo, I. Rodionova, N. Huang, O. Kurnasov, S. Zhong, A. D. Mackerell, H. Zhang, A. L. Osterman
Targeting Nad Biosynthesis In Bacterial Pathogens: Structure-Based Development Of Inhibitors Of Nicotinate Mononucleotide Adenylyltransferase Nadd.
Chem. Biol. V. 16 849 2009
PubMed-ID: 19716475  |  Reference-DOI: 10.1016/J.CHEMBIOL.2009.07.006
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NICOTINATE (NICOTINAMIDE) NUCLEOTIDE ADENYLYLTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Gene: BAS4230, NADD
    Organism Common: ANTHRAX,ANTHRAX BACTERIUM
    Organism Scientific: BACILLUS ANTHRACIS
    Organism Taxid: 1392

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CA3Ligand/IonCALCIUM ION
2DZ91Ligand/Ion3-AMINO-N-(3-FLUOROPHENYL)-6-THIOPHEN-2-YLTHIENO[2,3-B]PYRIDINE-2-CARBOXAMIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:85 , PHE A:103 , MET A:109 , TYR A:112 , LYS A:115 , TRP A:116 , HOH A:233 , HOH A:276 , HOH A:367 , THR B:85 , PHE B:103 , MET B:109 , TYR B:112 , LYS B:115 , TRP B:116 , HOH B:234 , HOH B:241 , HOH B:290 , HOH B:295BINDING SITE FOR RESIDUE DZ9 A 202
2AC2SOFTWAREGLU A:182 , GLU A:188 , HOH A:206 , HOH A:329 , HOH A:355BINDING SITE FOR RESIDUE CA A 203
3AC3SOFTWAREHIS A:27 , ASN A:30 , GLU A:188 , HOH A:290BINDING SITE FOR RESIDUE CA A 204
4AC4SOFTWAREGLU B:182 , GLU B:188 , HOH B:205 , HOH B:244 , HOH B:287 , HOH B:301BINDING SITE FOR RESIDUE CA B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HFJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Asp A:12 -Pro A:13
2Asp B:12 -Pro B:13

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HFJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HFJ)

(-) Exons   (0, 0)

(no "Exon" information available for 3HFJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains d3hfja_ A: automated matches                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhhhhh...eeeeee.............hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhh..eeeeeeeehhhhhhhhhh.hhhhhhh.eeeeeee............eeee......hhhhhhhhhhh........hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hfj A   1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180         


Chain B from PDB  Type:PROTEIN  Length:189
                                                                                                                                                                                                                             
               SCOP domains d3hfjb_ B: automated matches                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.....hhhhhhhhhhhhhhhh..eeeeee.............hhhhhhhhhhhhhh....eee...........hhhhhhhhhhhhh..eeeeeeee.hhhhhhhhh.hhhhhhh.eeeeeee............eeee......hhhhhhhhhhh........hhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hfj B   1 MRKIGIIGGTFDPPHYGHLLIANEVYHALNLEEVWFLPNQIPPHKQGRNITSVESRLQMLELATEAEEHFSICLEELSRKGPSYTYDTMLQLTKKYPDVQFHFIIGGDMVEYLPKWYNIEALLDLVTFVGVARPGYKLRTPYPITTVEIPEFAVSSSLLRERYKEKKTCKYLLPEKVQVYIERNGLYES 189
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HFJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HFJ)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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