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(-) Description

Title :  CRYSTAL STRUCTURE OF GENE PRODUCT 6, BASEPLATE PROTEIN OF BACTERIOPHAGE T4
 
Authors :  A. A. Aksyuk, P. G. Leiman, M. M. Shneider, V. V. Mesyanzhinov, M. G. Ross
Date :  14 Apr 09  (Deposition) - 19 May 09  (Release) - 20 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Viral Protein, Virion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. A. Aksyuk, P. G. Leiman, M. M. Shneider, V. V. Mesyanzhinov, M. G. Rossmann
The Structure Of Gene Product 6 Of Bacteriophage T4, The Hinge-Pin Of The Baseplate.
Structure V. 17 800 2009
PubMed-ID: 19523898  |  Reference-DOI: 10.1016/J.STR.2009.04.005

(-) Compounds

Molecule 1 - BASEPLATE STRUCTURAL PROTEIN GP6
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 334-660
    Gene: 6, GENE 6
    Organism Common: BACTERIOPHAGE T4
    Organism Scientific: ENTEROBACTERIA PHAGE T4
    Organism Taxid: 10665
    Strain: D
    Synonym: BASEPLATE WEDGE PROTEIN 6

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3H2T)

(-) Sites  (0, 0)

(no "Site" information available for 3H2T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H2T)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:474 -Val A:475
2Gly A:556 -Pro A:557
3Ser A:560 -Gly A:561
4Gln B:660 -Leu B:661

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H2T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H2T)

(-) Exons   (0, 0)

(no "Exon" information available for 3H2T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:326
 aligned with BP06_BPT4 | P19060 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:326
                                                                                                                                                                                                                                                                                                                                                          660     
                                   349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659|     
            BP06_BPT4   340 VTATDYDTFVSERFGSIIQAVQTFTDSTKPGYAFIAAKPKSGLYLTTVQREDIKNYLKDYNLAPITPSIISPNYLFIKTNLKVTYALNKLQESEQWLEGQIIDKIDRYYTEDVEIFNSSFAKSKMLTYVDDADHSVIGSSATIQMVREVQNFYKTPEAGIKYNNQIKDRSMESNTFSFNSGRKVVNPDTGLEEDVLYDVRIVSTDRDSKGIGKVIIGPFASGDVTENENIQPYTGNDFNKLANSDGRDKYYVIGEINYPADVIYWNIAKINLTSEKFEVQTIELYSDPTDDVIFTRDGSLIVFENDLRPQYLTIDLEPISQ-----   -
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.....eeeeee......eeeeeee...........................eeeee..eeeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh.....eehhhhhhhhhhh......eee..eeeeeee......................ee..eeee................eeeeeeee.......eeeeeee.................................eeeeeee....eeee.hhhh..hhhhh....eeeee......ee....eee..........eee...ee....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h2t A 340 VTATDYDTFVSERFGSIIQAVQTFTDSTKPGYAFIAAKPKSGLYLTTVQREDIKNYLKDYNLAPITPSIISPNYLFIKTNLKVTYALNKLQESEQWLEGQIIDKIDRYYTEDVEIFNSSFAKSKMLTYVDDADHSVIGSSATIQMVREVQNFYKTPEAGIKYNNQIKDRSMESNTFSFNSGRKVVNPDTGLEEDVLYDVRIVSTDRDSKGIGKVIIGPFASGDVTENENIQPYTGNDFNKLANSDGRDKYYVIGEINYPADVIYWNIAKINLTSEKFEVQTIELYSDPTDDVIFTRDGSLIVFENDLRPQYLTIDLEPISQLEHHH 665
                                   349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659      


Chain B from PDB  Type:PROTEIN  Length:324
 aligned with BP06_BPT4 | P19060 from UniProtKB/Swiss-Prot  Length:660

    Alignment length:324
                                                                                                                                                                                                                                                                                                                                                        660     
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651        |-    
            BP06_BPT4   342 ATDYDTFVSERFGSIIQAVQTFTDSTKPGYAFIAAKPKSGLYLTTVQREDIKNYLKDYNLAPITPSIISPNYLFIKTNLKVTYALNKLQESEQWLEGQIIDKIDRYYTEDVEIFNSSFAKSKMLTYVDDADHSVIGSSATIQMVREVQNFYKTPEAGIKYNNQIKDRSMESNTFSFNSGRKVVNPDTGLEEDVLYDVRIVSTDRDSKGIGKVIIGPFASGDVTENENIQPYTGNDFNKLANSDGRDKYYVIGEINYPADVIYWNIAKINLTSEKFEVQTIELYSDPTDDVIFTRDGSLIVFENDLRPQYLTIDLEPISQ-----   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhh...eeeeeeee.......eeeeeee......hhhhhhhhhh............eee..eeeeeeeeeeeeee......hhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhh......eeeeeeeeeeee......................ee....eeeeee..hhhhh...eeee...eee..........eeeeeehhhhh........................eeeee.eee....eee.hhhhhh.hhhhh....eeee......ee.....eee......hhh.eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3h2t B 342 ATDYDTFVSERFGSIIQAVQTFTDSTKPGYAFIAAKPKSGLYLTTVQREDIKNYLKDYNLAPITPSIISPNYLFIKTNLKVTYALNKLQESEQWLEGQIIDKIDRYYTEDVEIFNSSFAKSKMLTYVDDADHSVIGSSATIQMVREVQNFYKTPEAGIKYNNQIKDRSMESNTFSFNSGRKVVNPDTGLEEDVLYDVRIVSTDRDSKGIGKVIIGPFASGDVTENENIQPYTGNDFNKLANSDGRDKYYVIGEINYPADVIYWNIAKINLTSEKFEVQTIELYSDPTDDVIFTRDGSLIVFENDLRPQYLTIDLEPISQLEHHH 665
                                   351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H2T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H2T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H2T)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (BP06_BPT4 | P19060)
biological process
    GO:0019076    viral release from host cell    The dissemination of mature viral particles from the host cell, e.g. by cell lysis or the budding of virus particles from the cell membrane.
cellular component
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  Sites
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  Cis Peptide Bonds
    Gln B:660 - Leu B:661   [ RasMol ]  
    Gly A:556 - Pro A:557   [ RasMol ]  
    Ser A:474 - Val A:475   [ RasMol ]  
    Ser A:560 - Gly A:561   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BP06_BPT4 | P19060: 3h3w 3h3y 5hx2 5iv5 5iv7

(-) Related Entries Specified in the PDB File

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