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(-) Description

Title :  CRYSTAL STRUCTURE OF REPLICATION INITIATION FACTOR MCM10-ID BOUND TO SSDNA
 
Authors :  E. M. Warren, B. F. Eichman
Date :  10 Apr 09  (Deposition) - 14 Jul 09  (Release) - 25 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.72
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Ob-Fold, Zinc Finger, Ccch, Dna Replication, Ssdna, Dna-Binding, Metal-Binding, Nucleus, Zinc-Finger, Replication-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. M. Warren, H. Huang, E. Fanning, W. J. Chazin, B. F. Eichman
Physical Interactions Between Mcm10, Dna, And Dna Polymeras {Alpha}.
J. Biol. Chem. V. 284 24662 2009
PubMed-ID: 19608746  |  Reference-DOI: 10.1074/JBC.M109.020438

(-) Compounds

Molecule 1 - PROTEIN MCM10 HOMOLOG
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET32A
    Expression System Strain: DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 230-427, ZINC-FINGER DOMAIN, INTERNAL DOMAIN
    Gene: MCM10
    Organism Common: CLAWED FROG,COMMON PLATANNA,PLATANNA
    Organism Scientific: XENOPUS LAEVIS
    Organism Taxid: 8355
 
Molecule 2 - 5'-D(*CP*CP*CP*CP*CP*CP*CP*CP*C)-3'
    Chains: B
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1ZN1Ligand/IonZINC ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:381 , CYS A:391 , CYS A:403 , HIS A:406BINDING SITE FOR RESIDUE ZN A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H15)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly A:303 -Lys A:304

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H15)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H15)

(-) Exons   (0, 0)

(no "Exon" information available for 3H15)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:173
 aligned with MCM10_XENLA | Q5EAW4 from UniProtKB/Swiss-Prot  Length:860

    Alignment length:173
                                   244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404   
          MCM10_XENLA   235 QYHVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHV 407
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........ee....hhhhhhhhhh..ee.hhhhhhhhhhh.......eeeeeeeeeee...........eeeeee........eeeeehhhhhhhhh.....eeeeee..ee..........eee..hhh.eeeeeee..eee.............eee........... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h15 A 235 QYHVEKFSGLRIRKPRVSSSEMERKMNGRKLIRLAQLQNKIATEKLEEEDWVTFGVIVKKITPQSSNNGKTFSIWRLNDLKDLDKYISLFLFGDVHKEHWKTDQGTVIGLLNANPMKPKEGTDEVCLSVDNPQKVLLMGDAVDLGTCKARKKNGDPCTQMVNLNDCEYCQYHV 407
                                   244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404   


Chain B from PDB  Type:DNA  Length:3
                                   
                 3h15 B   9 CCC  11
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H15)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H15)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H15)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (MCM10_XENLA | Q5EAW4)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006974    cellular response to DNA damage stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism.
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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  3h15
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCM10_XENLA | Q5EAW4: 2kwq 3ebe 4jbz

(-) Related Entries Specified in the PDB File

3ebe UNLIGANDED FORM OF MCM10-ID