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(-) Description

Title :  CRYSTAL STRUCTURE OF CTSR IN COMPLEX WITH A 26BP DNA DUPLEX
 
Authors :  T. Clausen, J. Fuhrmann
Date :  09 Apr 09  (Deposition) - 30 Jun 09  (Release) - 19 Jan 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Protein Dna Complex, Winged Hth Domain, 4-Helix Bundle, Dna Tandem Repeat, Transcription/Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Fuhrmann, A. Schmidt, S. Spiess, A. Lehner, K. Turgay, K. Mechtler, E. Charpentier, T. Clausen
Mcsb Is A Protein Arginine Kinase That Phosphorylates And Inhibits The Heat-Shock Regulator Ctsr
Science V. 324 1323 2009
PubMed-ID: 19498169  |  Reference-DOI: 10.1126/SCIENCE.1170088
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CTSR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: B834
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CTSR
    Organism Scientific: BACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422
    Strain: NCA 26
 
Molecule 2 - DNA (26-MER)
    Chains: C
    Engineered: YES
    Synthetic: YES
 
Molecule 3 - DNA (26-MER)
    Chains: D
    Engineered: YES
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric/Biological Unit (2, 19)
No.NameCountTypeFull Name
1MSE16Mod. Amino AcidSELENOMETHIONINE
2PO43Ligand/IonPHOSPHATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:94 , GLN A:95 , ARG A:125 , ARG A:135 , ASP A:136 , ARG A:139BINDING SITE FOR RESIDUE PO4 A 157
2AC2SOFTWARELYS A:76 , SER A:77 , LYS A:153 , HOH A:193BINDING SITE FOR RESIDUE PO4 A 158
3AC3SOFTWARESER B:94 , GLN B:95 , ARG B:125 , ARG B:135 , ASP B:136 , ARG B:139BINDING SITE FOR RESIDUE PO4 B 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3H0D)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:132 -Pro A:133
2Leu B:132 -Pro B:133

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3H0D)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3H0D)

(-) Exons   (0, 0)

(no "Exon" information available for 3H0D)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:155
 aligned with CTSR_GEOSE | C3W947 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:155
                                                                                                                                                                                 153   
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151 |   
           CTSR_GEOSE     2 PNISDIIEQYLKQVLNMSDQDIVEIKRSEIANKFRCVPSQINYVINTRFTLERGYIVESKRGGGGYIRIMKVKTKSEAQLIDQLLELIDHRISQSSAEDVIKRLMEEKVISEREAKMMLSVMDRSVLYIDLPERDELRARMLKAMLTSLKYK---   -
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.....eeeehhhhhhhhh...hhhhhhhhhhhhhhhh.eeeeee.....eeeeeeeee..hhhhhhhhhh......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhheee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h0d A   2 PNISDIIEQYLKQVLNmSDQDIVEIKRSEIANKFRCVPSQINYVINTRFTLERGYIVESKRGGGGYIRImKVKTKSEAQLIDQLLELIDHRISQSSAEDVIKRLmEEKVISEREAKmmLSVmDRSVLYIDLPERDELRARmLKAmLTSLKYKLEI 156
                                    11      | 21        31        41        51        61        71        81        91       101    |  111      |121 |     131       141|   |  151     
                                           18-MSE                                               71-MSE                            106-MSE     118-MSE|                142-MSE          
                                                                                                                                               119-MSE                    146-MSE      
                                                                                                                                                   123-MSE                             


Chain B from PDB  Type:PROTEIN  Length:151
 aligned with CTSR_GEOSE | C3W947 from UniProtKB/Swiss-Prot  Length:153

    Alignment length:151
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152 
           CTSR_GEOSE     3 NISDIIEQYLKQVLNMSDQDIVEIKRSEIANKFRCVPSQINYVINTRFTLERGYIVESKRGGGGYIRIMKVKTKSEAQLIDQLLELIDHRISQSSAEDVIKRLMEEKVISEREAKMMLSVMDRSVLYIDLPERDELRARMLKAMLTSLKYK 153
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh....eeeehhhhhhhhh...hhhhhhhhhhhh.....eeeeee.....eeeeee....hhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3h0d B   3 NISDIIEQYLKQVLNmSDQDIVEIKRSEIANKFRCVPSQINYVINTRFTLERGYIVESKRGGGGYIRImKVKTKSEAQLIDQLLELIDHRISQSSAEDVIKRLmEEKVISEREAKmmLSVmDRSVLYIDLPERDELRARmLKAmLTSLKYK 153
                                    12     |  22        32        42        52        62        72        82        92       102   |   112     ||122|      132       142   |   152 
                                          18-MSE                                               71-MSE                            106-MSE     118-MSE|                142-MSE       
                                                                                                                                              119-MSE                    146-MSE   
                                                                                                                                                  123-MSE                          


Chain C from PDB  Type:DNA  Length:26
                                                          
                 3h0d C   1 GATTAAGGTCAAATATAGTCAAAATA  26
                                    10        20      


Chain D from PDB  Type:DNA  Length:26
                                                          
                 3h0d D   1 CTATTTTGACTATATTTGACCTTAAT  26
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3H0D)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3H0D)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3H0D)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (CTSR_GEOSE | C3W947)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006950    response to stress    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation).
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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