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(-) Description

Title :  VP7 RECOATED ROTAVIRUS DLP
 
Authors :  J. Z. Chen, E. C. Settembre, S. C. Harrison, N. Grigorieff
Date :  07 Apr 09  (Deposition) - 14 Jul 09  (Release) - 13 Jul 11  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.80
Chains :  Asym. Unit :  B,F,G,H,I,J,K,L,M,N,O,P,Q,X#
Biol. Unit 1:  B,F,G,H,I,J,K,L,M,N,O,P,Q,X#  (60x)
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 
Keywords :  Rotavirus, Vp7, Vp6, Vp2, 7Rp, Dlp, Icosahedral Virus, Capsid Protein, Disulfide Bond, Endoplasmic Reticulum, Glycoprotein, Membrane, Transmembrane, Virion, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Z. Chen, E. C. Settembre, S. T. Aoki, X. Zhang, A. R. Bellamy, P. R. Dormitzer, S. C. Harrison, N. Grigorieff
Molecular Interactions In Rotavirus Assembly And Uncoating Seen By High-Resolution Cryo-Em
Proc. Natl. Acad. Sci. Usa V. 106 10644 2009
PubMed-ID: 19487668  |  Reference-DOI: 10.1073/PNAS.0904024106

(-) Compounds

Molecule 1 - OUTER CAPSID GLYCOPROTEIN VP7
    Chains: B, F, G, H, I, J, K, L, M, N, O, P, Q
    Fragment: VP7 (UNP RESIDUES 58 TO 312)
    Organism Common: RV-A
    Organism Scientific: RHESUS ROTAVIRUS
    Organism Taxid: 10969
    Strain: UK

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric Unit : BFGHIJKLMNOPQX#
Biological Unit 1 (60x): BFGHIJKLMNOPQX#
( #:   chains that contain no standard or modified protein/DNA/RNA residue)
 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 56)

Asymmetric Unit (2, 56)
No.NameCountTypeFull Name
1CA30Ligand/IonCALCIUM ION
2NAG26Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 1560)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2NAG1560Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (54, 54)

Asymmetric Unit (54, 54)
No.NameEvidenceResiduesDescription
01AC1SOFTWARENAG B:2 , ASN B:69BINDING SITE FOR RESIDUE NAG B 1
02AC2SOFTWARENAG B:1BINDING SITE FOR RESIDUE NAG B 2
03AC3SOFTWARENAG G:8 , ASN G:69BINDING SITE FOR RESIDUE NAG G 7
04AC4SOFTWARENAG G:7BINDING SITE FOR RESIDUE NAG G 8
05AC5SOFTWARENAG H:10 , ASN H:69BINDING SITE FOR RESIDUE NAG H 9
06AC6SOFTWARENAG H:9BINDING SITE FOR RESIDUE NAG H 10
07AC7SOFTWARENAG F:12 , ASN F:69BINDING SITE FOR RESIDUE NAG F 11
08AC8SOFTWARENAG F:11BINDING SITE FOR RESIDUE NAG F 12
09AC9SOFTWARENAG J:14 , ASN J:69BINDING SITE FOR RESIDUE NAG J 13
10BC1SOFTWARENAG J:13BINDING SITE FOR RESIDUE NAG J 14
11BC2SOFTWARENAG K:16 , ASN K:69BINDING SITE FOR RESIDUE NAG K 15
12BC3SOFTWARENAG K:15BINDING SITE FOR RESIDUE NAG K 16
13BC4SOFTWARENAG I:18 , ASN I:69BINDING SITE FOR RESIDUE NAG I 17
14BC5SOFTWARENAG I:17BINDING SITE FOR RESIDUE NAG I 18
15BC6SOFTWARENAG M:20 , ASN M:69BINDING SITE FOR RESIDUE NAG M 19
16BC7SOFTWARENAG M:19BINDING SITE FOR RESIDUE NAG M 20
17BC8SOFTWARENAG N:22 , ASN N:69BINDING SITE FOR RESIDUE NAG N 21
18BC9SOFTWARENAG N:21BINDING SITE FOR RESIDUE NAG N 22
19CC1SOFTWARENAG L:24 , ASN L:69BINDING SITE FOR RESIDUE NAG L 23
20CC2SOFTWARENAG L:23BINDING SITE FOR RESIDUE NAG L 24
21CC3SOFTWARENAG P:26 , ASN P:69BINDING SITE FOR RESIDUE NAG P 25
22CC4SOFTWARENAG P:25BINDING SITE FOR RESIDUE NAG P 26
23CC5SOFTWARENAG Q:28 , ASN Q:69BINDING SITE FOR RESIDUE NAG Q 27
24CC6SOFTWARENAG Q:27BINDING SITE FOR RESIDUE NAG Q 28
25CC7SOFTWARENAG O:30 , ASN O:69BINDING SITE FOR RESIDUE NAG O 29
26CC8SOFTWARENAG O:29BINDING SITE FOR RESIDUE NAG O 30
27CC9SOFTWAREASP B:301BINDING SITE FOR RESIDUE CA B 320
28DC1SOFTWAREASP B:95BINDING SITE FOR RESIDUE CA B 321
29DC2SOFTWAREGLN B:177 , ASP B:179 , ASP B:228 , VAL B:229 , ASP B:231BINDING SITE FOR RESIDUE CA B 322
30DC3SOFTWAREGLY B:206 , THR B:214 , PHE B:215 , GLU B:216BINDING SITE FOR RESIDUE CA B 323
31DC4SOFTWAREASP F:301 , GLN H:177 , ASP H:179 , ASP H:228 , VAL H:229 , ASP H:231BINDING SITE FOR RESIDUE CA H 324
32DC5SOFTWAREASP F:95 , GLY H:206 , THR H:214 , PHE H:215 , GLU H:216BINDING SITE FOR RESIDUE CA H 325
33DC6SOFTWAREGLN F:177 , ASP F:179 , ASP F:228 , VAL F:229 , ASP F:231 , ASP G:301BINDING SITE FOR RESIDUE CA F 326
34DC7SOFTWAREGLY F:206 , THR F:214 , PHE F:215 , GLU F:216 , ASP G:95BINDING SITE FOR RESIDUE CA F 327
35DC8SOFTWAREGLN G:177 , ASP G:179 , ASP G:228 , VAL G:229 , ASP G:231 , ASP H:301BINDING SITE FOR RESIDUE CA G 328
36DC9SOFTWAREGLY G:206 , THR G:214 , PHE G:215 , GLU G:216 , ASP H:95BINDING SITE FOR RESIDUE CA G 329
37EC1SOFTWAREASP I:301 , GLN K:177 , ASP K:179 , ASP K:228 , VAL K:229 , ASP K:231BINDING SITE FOR RESIDUE CA K 330
38EC2SOFTWAREASP I:95 , GLY K:206 , THR K:214 , PHE K:215 , GLU K:216BINDING SITE FOR RESIDUE CA K 331
39EC3SOFTWAREGLN I:177 , ASP I:179 , ASP I:228 , VAL I:229 , ASP I:231 , ASP J:301BINDING SITE FOR RESIDUE CA I 332
40EC4SOFTWAREGLY I:206 , THR I:214 , PHE I:215 , GLU I:216 , ASP J:95BINDING SITE FOR RESIDUE CA I 333
41EC5SOFTWAREGLN J:177 , ASP J:179 , ASP J:228 , VAL J:229 , ASP J:231 , ASP K:301BINDING SITE FOR RESIDUE CA J 334
42EC6SOFTWAREGLY J:206 , THR J:214 , PHE J:215 , GLU J:216 , ASP K:95BINDING SITE FOR RESIDUE CA J 335
43EC7SOFTWAREASP L:301 , GLN N:177 , ASP N:179 , ASP N:228 , VAL N:229 , ASP N:231BINDING SITE FOR RESIDUE CA N 336
44EC8SOFTWAREASP L:95 , GLY N:206 , THR N:214 , PHE N:215 , GLU N:216BINDING SITE FOR RESIDUE CA N 337
45EC9SOFTWAREGLN L:177 , ASP L:179 , ASP L:228 , VAL L:229 , ASP L:231 , ASP M:301BINDING SITE FOR RESIDUE CA L 338
46FC1SOFTWAREGLY L:206 , THR L:214 , PHE L:215 , GLU L:216 , ASP M:95BINDING SITE FOR RESIDUE CA L 339
47FC2SOFTWAREGLN M:177 , ASP M:179 , ASP M:228 , VAL M:229 , ASP M:231 , ASP N:301BINDING SITE FOR RESIDUE CA M 340
48FC3SOFTWAREGLY M:206 , THR M:214 , PHE M:215 , GLU M:216 , ASP N:95BINDING SITE FOR RESIDUE CA M 341
49FC4SOFTWAREASP O:301 , GLN Q:177 , ASP Q:179 , ASP Q:228 , VAL Q:229 , ASP Q:231BINDING SITE FOR RESIDUE CA Q 342
50FC5SOFTWAREASP O:95 , GLY Q:206 , THR Q:214 , PHE Q:215 , GLU Q:216BINDING SITE FOR RESIDUE CA Q 343
51FC6SOFTWAREGLN O:177 , ASP O:179 , ASP O:228 , VAL O:229 , ASP O:231 , ASP P:301BINDING SITE FOR RESIDUE CA O 344
52FC7SOFTWAREGLY O:206 , THR O:214 , PHE O:215 , GLU O:216 , ASP P:95BINDING SITE FOR RESIDUE CA O 345
53FC8SOFTWAREGLN P:177 , ASP P:179 , ASP P:228 , VAL P:229 , ASP P:231 , ASP Q:301BINDING SITE FOR RESIDUE CA P 346
54FC9SOFTWAREGLY P:206 , THR P:214 , PHE P:215 , GLU P:216 , ASP Q:95BINDING SITE FOR RESIDUE CA P 347

(-) SS Bonds  (52, 52)

Asymmetric Unit
No.Residues
1B:82 -B:135
2B:165 -B:249
3B:191 -B:244
4B:196 -B:207
5F:82 -F:135
6F:165 -F:249
7F:191 -F:244
8F:196 -F:207
9G:82 -G:135
10G:165 -G:249
11G:191 -G:244
12G:196 -G:207
13H:82 -H:135
14H:165 -H:249
15H:191 -H:244
16H:196 -H:207
17I:82 -I:135
18I:165 -I:249
19I:191 -I:244
20I:196 -I:207
21J:82 -J:135
22J:165 -J:249
23J:191 -J:244
24J:196 -J:207
25K:82 -K:135
26K:165 -K:249
27K:191 -K:244
28K:196 -K:207
29L:82 -L:135
30L:165 -L:249
31L:191 -L:244
32L:196 -L:207
33M:82 -M:135
34M:165 -M:249
35M:191 -M:244
36M:196 -M:207
37N:82 -N:135
38N:165 -N:249
39N:191 -N:244
40N:196 -N:207
41O:82 -O:135
42O:165 -O:249
43O:191 -O:244
44O:196 -O:207
45P:82 -P:135
46P:165 -P:249
47P:191 -P:244
48P:196 -P:207
49Q:82 -Q:135
50Q:165 -Q:249
51Q:191 -Q:244
52Q:196 -Q:207

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GZT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 13)

Asymmetric Unit (1, 13)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_VP7_ROTRH_002 *A171TVP7_ROTRH  ---  ---B/F/G/H/I/J/K/L/M/N/O/P/QT171T
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (1, 780)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_VP7_ROTRH_002 *A171TVP7_ROTRH  ---  ---B/F/G/H/I/J/K/L/M/N/O/P/QT171T
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GZT)

(-) Exons   (0, 0)

(no "Exon" information available for 3GZT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain B from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt B  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain F from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt F  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain G from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh....eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt G  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain H from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt H  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain I from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt I  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain J from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt J  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain K from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt K  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain L from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt L  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain M from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt M  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain N from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt N  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain O from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt O  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain P from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt P  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     


Chain Q from PDB  Type:PROTEIN  Length:255
 aligned with VP7_ROTRH | P12476 from UniProtKB/Swiss-Prot  Length:326

    Alignment length:255
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307     
            VP7_ROTRH    58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDIALYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhh.eeeeeehhhhhhhh..hhhhhhhhhhhhh..hhh.eeeeee.hhhhhhhh......eeeeeee....hhhhhhhhhhhhh...eeee..............eeeeeeeeeeeeeeeee.................eeeeeeeeeeee......eeeee.....eeeeeee.........eeee....................eeee...hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------T--------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gzt Q  58 PITGSMDTAYANSTQEETFLTSTLCLYYPTEAATEINDNSWKDTLSQLFLTKGWPTGSVYFKEYTDIASFSVDPQLYCDYNVVLMKYDATLQLDMSELADLILNEWLCNPMDITLYYYQQTDEANKWISMGSSCTIKVCPLNTQTLGIGCLTTDTATFEEVATAEKLVITDVVDGVNHKLDVTTATCTIRNCKKLGPRENVAVIQVGGSDVLDITADPTTAPQTERMMRINWKKWWQVFYTVVDYVNQIIQAMSK 312
                                    67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GZT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GZT)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GZT)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain B,F,G,H,I,J,K,L,M,N,O,P,Q   (VP7_ROTRH | P12476)
biological process
    GO:0016032    viral process    A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
cellular component
    GO:0039621    T=13 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=13 symmetry. The T=13 capsid is composed of 12 pentameric and 120 hexameric capsomeres.
    GO:0044165    host cell endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the host cell cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The host ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0044166    host cell endoplasmic reticulum lumen    The volume enclosed by the membranes of the host cell endoplasmic reticulum.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0039624    viral outer capsid    The outer layer of a double or triple concentric icosahedral capsid. Outer capsids are part of reoviridae and cystoviridae virions.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  Cis Peptide Bonds
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  3gzt
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  VP7_ROTRH | P12476
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VP7_ROTRH | P12476: 3fmg

(-) Related Entries Specified in the PDB File

3gzu VP6-VP2 DLP