3GZM - JenaLib

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Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HOLO PFACP REDUCED MONOMER

Authors :   J. R. Gallagher, S. T. Prigge

Date :   07 Apr 09 (Deposition) - 21 Apr 09 (Release) - 26 May 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Helix Bundle, Phosphopantetheine, Fatty Acid Biosynthesis, Lipid Synthesis, Transit Peptide, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Gallagher, S. T. Prigge
Plasmodium Falciparum Acyl Carrier Protein Crystal Structures In Disulfide-Linked And Reduced States And Their Prevalence During Blood Stage Growth.
Proteins V. 78 575 2010
PubMed-ID: 19768685 | Reference-DOI: 10.1002/PROT.22582

Molecule 1 - ACYL CARRIER PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMAL-C2X
	Expression System Strain	:	BL21(DE3)STAR
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	ACP, ACPP
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	5833
	Strain	:	3D7

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 17)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	MLI	14	Ligand/Ion	MALONATE ION
3	PNS	2	Ligand/Ion	4'-PHOSPHOPANTETHEINE

Biological Unit 1 (3, 7)

No.	Name	Count	Type	Full Name
1	BME	1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	MLI	5	Ligand/Ion	MALONATE ION
3	PNS	1	Ligand/Ion	4'-PHOSPHOPANTETHEINE

Biological Unit 2 (2, 10)

No.	Name	Count	Type	Full Name
1	BME	-1	Ligand/Ion	BETA-MERCAPTOETHANOL
2	MLI	9	Ligand/Ion	MALONATE ION
3	PNS	1	Ligand/Ion	4'-PHOSPHOPANTETHEINE

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:39 , LEU A:40 , MET A:47 , ASP A:59 , HOH A:114 , PNS B:100 , MLI B:311	BINDING SITE FOR RESIDUE PNS A 100
02	AC2	SOFTWARE	PNS A:100 , MLI A:304 , SER B:39 , LEU B:40 , GLN B:69 , ASP B:73 , LYS B:77 , MLI B:305 , MLI B:309 , MLI B:311	BINDING SITE FOR RESIDUE PNS B 100
03	AC3	SOFTWARE	LEU A:42 , ILE A:46 , ALA A:62 , ILE A:65 , MLI A:310	BINDING SITE FOR RESIDUE BME A 200
04	AC4	SOFTWARE	SER B:1 , SER B:2 , LEU B:3 , VAL B:43 , ASP B:59 , ALA B:62 , MLI B:302 , MLI B:311	BINDING SITE FOR RESIDUE MLI B 300
05	AC5	SOFTWARE	LYS A:24 , MLI A:304 , LYS B:16 , GLN B:17 , GLU B:44 , MET B:47 , ALA B:48	BINDING SITE FOR RESIDUE MLI B 301
06	AC6	SOFTWARE	ILE B:46 , ALA B:62 , LEU B:63 , ILE B:65 , MLI B:300 , MLI B:303 , MLI B:306	BINDING SITE FOR RESIDUE MLI B 302
07	AC7	SOFTWARE	LEU A:63 , ASN A:66 , MLI A:310 , ILE B:65 , ASN B:66 , HOH B:133 , MLI B:302 , MLI B:306	BINDING SITE FOR RESIDUE MLI B 303
08	AC8	SOFTWARE	GLU B:44 , GLN B:69 , PNS B:100 , MLI B:301 , MLI B:309 , MLI B:311	BINDING SITE FOR RESIDUE MLI A 304
09	AC9	SOFTWARE	LYS A:33 , LEU B:40 , ASP B:70 , ASP B:73 , PNS B:100 , HOH B:104 , HOH B:131	BINDING SITE FOR RESIDUE MLI B 305
10	BC1	SOFTWARE	LEU A:63 , MLI A:310 , SER B:39 , LEU B:42 , LEU B:63 , HOH B:139 , MLI B:302 , MLI B:303	BINDING SITE FOR RESIDUE MLI B 306
11	BC2	SOFTWARE	LYS A:4 , VAL B:20 , LYS B:24 , ASP B:34 , LEU B:35 , GLN B:60	BINDING SITE FOR RESIDUE MLI A 307
12	BC3	SOFTWARE	LEU A:3 , MET A:27 , LYS A:64 , GLN A:69 , ILE A:72 , ASP A:73 , GLU A:76 , LYS A:77 , HOH A:136	BINDING SITE FOR RESIDUE MLI A 308
13	BC4	SOFTWARE	MLI A:304 , LEU B:40 , GLN B:69 , PNS B:100 , HOH B:141	BINDING SITE FOR RESIDUE MLI B 309
14	BC5	SOFTWARE	VAL A:43 , ALA A:62 , LEU A:63 , BME A:200 , MLI B:303 , MLI B:306	BINDING SITE FOR RESIDUE MLI A 310
15	BC6	SOFTWARE	PNS A:100 , MLI A:304 , VAL B:43 , GLN B:81 , PNS B:100 , MLI B:300	BINDING SITE FOR RESIDUE MLI B 311
16	BC7	SOFTWARE	ASN A:28 , ASN A:30 , THR A:67 , HOH A:84 , MLI A:313 , ASN B:30 , LYS B:33 , THR B:67 , HOH B:83 , HOH B:107	BINDING SITE FOR RESIDUE MLI B 312
17	BC8	SOFTWARE	MET A:27 , ASN A:28 , THR A:67 , GLN A:69 , ASP A:70 , HOH A:83 , LYS B:33 , MLI B:312	BINDING SITE FOR RESIDUE MLI A 313

(no "SS Bond" information available for 3GZM)

Asymmetric Unit

No.	Residues
1	Asn B:79	-	Lys B:80
2	Lys B:80	-	Gln B:81

(no "SAP(SNP)/Variant" information available for 3GZM)

(no "PROSITE Motif" information available for 3GZM)

(no "Exon" information available for 3GZM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:78
 aligned with O77077_PLAFA | O77077 from UniProtKB/TrEMBL  Length:137

    Alignment length:78
                                    67        77        87        97       107       117       127        
         O77077_PLAFA    58 SLKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNN 135
               SCOP domains d3gzma_ A: automated matches                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhh....hhhhhh..hhhhhhhhhhhhhhhhh...hhhhhhh..hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 3gzm A   2 SLKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNN  79
                                    11        21        31        41        51        61        71

Chain B from PDB  Type:PROTEIN  Length:81
 aligned with O77077_PLAFA | O77077 from UniProtKB/TrEMBL  Length:137

    Alignment length:81
                                    66        76        86        96       106       116       126       136 
         O77077_PLAFA    57 SSLKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNKQ 137
               SCOP domains d3gzmb_ B: automated matches                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.hhhhh............hhhhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------- Transcript
                 3gzm B   1 SSLKSTFDDIKKIISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNKQ  81
                                    10        20        30        40        50        60        70        80

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Acyl carrier protein-like (148)

Superfamily: ACP-like (68)

Family: automated matches (21)

Protein domain: automated matches (21)

Malaria parasite (Plasmodium falciparum) [TaxId: 5833] (2)

1a	d3gzma_	A:
1b	d3gzmb_	B:

(no "CATH Domain" information available for 3GZM)

(no "Pfam Domain" information available for 3GZM)

Asymmetric Unit(hide GO term definitions)

Chain A,B (O77077_PLAFA | O77077)

biological process
	GO:0006633		fatty acid biosynthetic process		The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Asn B:79 - Lys B:80	[ RasMol ]
		Lys B:80 - Gln B:81	[ RasMol ]

Biological Units
	Complete Structure
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		Biological Unit 2	[ Jena3D ]

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	3gzm
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	O77077_PLAFA \| O77077	:	2fq0 2fq2 3gzl

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 17)

Sites (17, 17)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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