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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE ZN-DEPENDENT EXOPEPTIDASE (BVU_1317) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.80 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Mar 09  (Deposition) - 07 Apr 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Aminopeptidase, Phosphorylase/Hydrolase-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Zn-Dependent Exopeptidase (Yp_001298628. 1) From Bacteroides Vulgatus Atcc 8482 At 1. 8 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ZN-DEPENDENT EXOPEPTIDASE
    Atcc: 8482
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_1317, YP_001298628.1
    Organism Scientific: BACTEROIDES VULGATUS ATCC 8482
    Organism Taxid: 435590
    Synonym: LEUCINE AMINOPEPTIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 5)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 4)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:65 , THR A:66 , HIS A:69 , LYS A:70 , LYS A:103 , HOH A:340 , HOH A:482BINDING SITE FOR RESIDUE ACT A 335
2AC2SOFTWAREASP A:47 , HIS A:254 , ASN A:317 , LYS A:320 , HOH A:456BINDING SITE FOR RESIDUE EDO A 336
3AC3SOFTWAREASN B:65 , THR B:66 , HIS B:69 , LYS B:70 , HOH B:368 , HOH B:440 , HOH B:475BINDING SITE FOR RESIDUE ACT B 335

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3GUX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3GUX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3GUX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3GUX)

(-) Exons   (0, 0)

(no "Exon" information available for 3GUX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with A6KZZ2_BACV8 | A6KZZ2 from UniProtKB/TrEMBL  Length:334

    Alignment length:298
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
         A6KZZ2_BACV8    37 EVIKAPEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHWDSRPYADNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYGIPEFYDGKYKQDTWCLGSQYWARTPHVQNYNARYGILLDMVGGKDATFYYEGYSARTARSEMKKIWKKAHELGYGKYFVKEDGGETVDDHIYVNKLARIPCVDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVIYNEK 334
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeee......eeeeeee.....--------------------hhhhhhhhhhhhhhhhhh....eeeeeee.....-----------....hhhhhhhhhh.........eeeeee........eee..hhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhh...eeeee...--------------------..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gux A  37 EVIKAPEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHWDSRP--------------------GASGVGVLLEIARQIQKEQPALGIDIVFFDSEDY-----------QDTWCLGSQYWARTPHVQNYNARYGILLDmVGGKDATFYYEGYSARTARSEmKKIWKKAHELGYGKYFVKEDGGETVDDHIYVNKLARIPCVDIINYD--------------------NIDRNTLKAVGQTVmDVIYNEK 334
                                    46        56        66        76        86        96       106       116       126  |      -         -   |   156       166       176      |  -       196       206       216       226       236       246       256       266       276       286     |   -         -      |316       326|       
                                                                                                                      129                  150                              183         195                          224-MSE               246-MSE                                       292                  313           327-MSE   


Chain B from PDB  Type:PROTEIN  Length:246
 aligned with A6KZZ2_BACV8 | A6KZZ2 from UniProtKB/TrEMBL  Length:334

    Alignment length:298
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326        
         A6KZZ2_BACV8    37 EVIKAPEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHWDSRPYADNDPDPKNHHTPILGVNDGASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYGIPEFYDGKYKQDTWCLGSQYWARTPHVQNYNARYGILLDMVGGKDATFYYEGYSARTARSEMKKIWKKAHELGYGKYFVKEDGGETVDDHIYVNKLARIPCVDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVIYNEK 334
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..eeeeeeeeee.....eeeeeeeeeee......eeeeeee.....--------------------hhhhhhhhhhhhhhhhhh....eeeeeee......------------..hhhhhhhhhh..........eeeee........eeehhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhhhh..eeeee...--------------------..hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3gux B  37 EVIKAPEFDADSAYQYIQVQADFGPRVPNTQAHKECGEYLAGQLEKFGAKVYNQYADLIAYDGTILKSRNIIGAYKPESKKRILLCAHWDSRP--------------------GASGVGVLLEIARQIQKEQPALGIDIVFFDSEDYG------------TWCLGSQYWARTPHVQNYNARYGILLDmVGGKDATFYYEGYSARTARSEmKKIWKKAHELGYGKYFVKEDGGETVDDHIYVNKLARIPCVDIINYD--------------------NIDRNTLKAVGQTVmDVIYNEK 334
                                    46        56        66        76        86        96       106       116       126  |      -         -   |   156       166       176       | -         -|      206       216       226       236       246       256       266       276       286     |   -         -      |316       326|       
                                                                                                                      129                  150                               184          197                        224-MSE               246-MSE                                       292                  313           327-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3GUX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3GUX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3GUX)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (A6KZZ2_BACV8 | A6KZZ2)
molecular function
    GO:0004177    aminopeptidase activity    Catalysis of the hydrolysis of N-terminal amino acid residues from in a polypeptide chain.
biological process
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.

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